User:Wayne Decatur/Sandboxmangai
From Proteopedia
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==Isochorismate-Pyruvate Lyase== | ==Isochorismate-Pyruvate Lyase== | ||
| + | '''Isochorismate-Pyruvate Lyase: apo enzyme to open conformation with pyruvate bound'''<br> | ||
| + | made by chains A and B of 2h9c morphed to A and B of 2h9d<br> | ||
'''Isochorismate-Pyruvate Lyase: open conformation with pyruvate bound morphing to closed conformation with pyruvate bound'''<br> | '''Isochorismate-Pyruvate Lyase: open conformation with pyruvate bound morphing to closed conformation with pyruvate bound'''<br> | ||
Revision as of 19:23, 27 November 2008
Isochorismate-Pyruvate Lyase
Isochorismate-Pyruvate Lyase: apo enzyme to open conformation with pyruvate bound
made by chains A and B of 2h9c morphed to A and B of 2h9d
Isochorismate-Pyruvate Lyase: open conformation with pyruvate bound morphing to closed conformation with pyruvate bound
made by chains A and B of 2h9d morphed to chains C and D
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Click with all 8 models obtained from editing sets of chains A and B and chains C and D to be submitted to Yale Morph server.
Copied C and D and pyruvates to new files. For chains A and B file, I deleted C and D and CA heteroatom. Used alter command (example for chain c= select chain C; alter (chain C),chain='A') in pymol to change names of C and D chains in file to A and B. Then removed some residues with gaps to match better but seemed unnecessary because one worked before doing that but I thought it failed because went to spam.
Found out about alter command at http://pymol.sourceforge.net/newman/ref/S1000comref.html. Ran sort command after each altering.
