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User:Wayne Decatur/SandboxRibosome

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==Sandbox for Ribosome==
==Sandbox for Ribosome==
==Structure==
==Structure==
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<table width='400' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1ema' size='390' frame='true' align='right' scene='User:Wayne_Decatur/SandboxRibosome/Testbothmodels/2' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Ribosome''' (1jgo and 1giy), resolution 5.5&Aring; (<scene name='User:Wayne_Decatur/SandboxRibosome/Testbothmodels/2'>initial scene</scene>).</center></td></tr></table>
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<table width='400' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1ema' size='390' frame='true' align='right' scene='User:Wayne_Decatur/SandboxRibosome/Testbothmodels/3' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''The Ribosome''' (1jgo and 1giy), resolution 5.5&Aring; (<scene name='User:Wayne_Decatur/SandboxRibosome/Testbothmodels/3'>initial scene</scene>).</center></td></tr></table>
1jgo1giy.gz.pdb is the file being used.
1jgo1giy.gz.pdb is the file being used.
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I cannot figure out yet how to select for example protein in model 1 and color it differently. The usual commands of 'select protein and model=1' or 'select protein and model=2; color cartoon [x6060EE]; color [x6060EE];\' are not working. Always says zero atoms selected when I try such commands.
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I figured out how to color components of models using decimals!
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For example, for small subunit:
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select 1.1 and protein; color cartoon firebrick;
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For large subuniy,
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select 1.2 and protein; color cartoon blue;

Revision as of 06:37, 30 January 2009

Sandbox for Ribosome

Structure

 

PDB ID 1ema

Drag the structure with the mouse to rotate
The Ribosome (1jgo and 1giy), resolution 5.5Å ().

1jgo1giy.gz.pdb is the file being used.


I figured out how to color components of models using decimals! For example, for small subunit: select 1.1 and protein; color cartoon firebrick;


For large subuniy, select 1.2 and protein; color cartoon blue;

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur

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