Template:STRUCTURE 1diz
From Proteopedia
(Difference between revisions)
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- | {{ | + | {{Structure |
- | |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1diz, resolution 2.50Å (<scene name='initialview01'> | + | |PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1diz]], resolution 2.50Å (<scene name='initialview01'>default scene</scene>)}}} |
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | |LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | ||
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-3-methyladenine_glycosylase_II DNA-3-methyladenine glycosylase II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.21 3.2.2.21] </span> | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-3-methyladenine_glycosylase_II DNA-3-methyladenine glycosylase II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.21 3.2.2.21] </span> | ||
Line 9: | Line 9: | ||
|PROCESS={{GO|id=GO:0006974 | text = response to DNA damage stimulus}}{{GO|id=GO:0006284 | text = base-excision repair}}{{GO|id=GO:0006281 | text = DNA repair}} | |PROCESS={{GO|id=GO:0006974 | text = response to DNA damage stimulus}}{{GO|id=GO:0006284 | text = base-excision repair}}{{GO|id=GO:0006281 | text = DNA repair}} | ||
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA02 1Diza02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA03 1Diza03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA01 1Diza01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB01 1Dizb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB02 1Dizb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB03 1Dizb03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000035 Ipr000035], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003265 Ipr003265], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011257 Ipr011257], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010316 Ipr010316], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012294 Ipr012294]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00730 PF00730], [http://pfam.sanger.ac.uk/family?acc=PF06029 PF06029]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18749 d1diza1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=41298 d1diza2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18750 d1dizb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=41299 d1dizb2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P04395 P04395]</span> | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA02 1Diza02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA03 1Diza03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA01 1Diza01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB01 1Dizb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB02 1Dizb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB03 1Dizb03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000035 Ipr000035], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003265 Ipr003265], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011257 Ipr011257], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010316 Ipr010316], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012294 Ipr012294]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00730 PF00730], [http://pfam.sanger.ac.uk/family?acc=PF06029 PF06029]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18749 d1diza1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=41298 d1diza2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=18750 d1dizb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=41299 d1dizb2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P04395 P04395]</span> | ||
+ | |CONSURF={{!}}- | ||
+ | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | ||
+ | {{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" | ||
+ | {{!}} '''Toggle Conservation Colors:''' | ||
+ | {{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} | ||
+ | Rows = identical sequences: | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>A [x]</text> | ||
+ | <name>jmb_1diz_A</name> | ||
+ | <title>toggle chain A</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>C [x]</text> | ||
+ | <name>jmb_1diz_C</name> | ||
+ | <title>toggle chain C</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>B [x]</text> | ||
+ | <name>jmb_1diz_B</name> | ||
+ | <title>toggle chain B</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>D [x]</text> | ||
+ | <name>jmb_1diz_D</name> | ||
+ | <title>toggle chain D</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>E [x]</text> | ||
+ | <name>jmb_1diz_E</name> | ||
+ | <title>toggle chain E</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | <jmol> | ||
+ | <jmolButton> | ||
+ | <script></script> | ||
+ | <text>F [x]</text> | ||
+ | <name>jmb_1diz_F</name> | ||
+ | <title>toggle chain F</title> | ||
+ | <jsscript>ConsurfChainButton(elementClicked)</jsscript> | ||
+ | <appendtargetsuffixtoid>true</appendtargetsuffixtoid> | ||
+ | </jmolButton> | ||
+ | </jmol> | ||
+ | |||
}} | }} |
Revision as of 13:10, 16 February 2009
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1diz, resolution 2.50Å () | |||||||||
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Ligands: | |||||||||
Non-Standard Residues: | |||||||||
Activity: | DNA-3-methyladenine glycosylase II, with EC number 3.2.2.21 | ||||||||
Domains: | PRK10308, ENDO3c, AlkA_N | ||||||||
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Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
Coordinates: | save as pdb, mmCIF, xml |