This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

Template:STRUCTURE 1diz

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 13:10, 16 February 2009

1diz, resolution 2.50Å ()

Ligands:

Non-Standard Residues:

Activity:

DNA-3-methyladenine glycosylase II, with EC number 3.2.2.21

Domains:

PRK10308, ENDO3c, AlkA_N

Structural annotation:
Resources:	CATH : 1Diza02, 1Diza03, 1Diza01, 1Dizb01, 1Dizb02, 1Dizb03 InterPro : Ipr000035, Ipr003265, Ipr011257, Ipr010316, Ipr012294 Pfam : PF00730, PF06029 SCOP : d1diza1, d1diza2, d1dizb1, d1dizb2 UniProt : P04395

Functional annotation:
Biological process:	response to DNA damage stimulus base-excision repair DNA repair
Molecular function:	hydrolase activity DNA binding protein binding alkylbase DNA N-glycosylase activity

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1diz"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1diz, resolution 2.50&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1diz]], resolution 2.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-3-methyladenine_glycosylase_II DNA-3-methyladenine glycosylase II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.21 3.2.2.21] </span>
@@ Line 9: / Line 9: @@
 |PROCESS={{GO|id=GO:0006974 | text = response to DNA damage stimulus}}{{GO|id=GO:0006284 | text = base-excision repair}}{{GO|id=GO:0006281 | text = DNA repair}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA02 1Diza02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA03 1Diza03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizA01 1Diza01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB01 1Dizb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB02 1Dizb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1dizB03 1Dizb03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000035 Ipr000035], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003265 Ipr003265], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011257 Ipr011257], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010316 Ipr010316], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012294 Ipr012294]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00730 PF00730], [http://pfam.sanger.ac.uk/family?acc=PF06029 PF06029]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=18749 d1diza1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=41298 d1diza2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=18750 d1dizb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=41299 d1dizb2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P04395 P04395]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1diz_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1diz_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1diz_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1diz_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>E [x]</text>
+<name>jmb_1diz_E</name>
+<title>toggle chain E</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>F [x]</text>
+<name>jmb_1diz_F</name>
+<title>toggle chain F</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1diz

From Proteopedia

Revision as of 13:10, 16 February 2009

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox