Template:STRUCTURE 1tdh

From Proteopedia

(Difference between revisions)

Revision as of 07:09, 17 February 2009

1tdh, resolution 2.10Å ()

Ligands:

Domains:

Structural annotation:
Resources:	InterPro : Ipr010979, Ipr015886, Ipr015371, Ipr015887, Ipr012319 Pfam : PF01149, PF06831, PF09292 SCOP : d1tdha1, d1tdha2, d1tdha3 UniProt : Q96FI4

Functional annotation:
Resources:	GeneCard : NEIL1
Cellular component:	nucleus
Biological process:	DNA repair response to DNA damage stimulus base-excision repair metabolic process
Molecular function:	oxidized purine base lesion DNA N-glycosylase activity damaged DNA binding zinc ion binding DNA-(apurinic or apyrimidinic site) lyase activity catalytic activity hydrolase activity, acting on glycosyl bonds DNA binding lyase activity hydrolase activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1tdh"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1tdh, resolution 2.10&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1tdh]], resolution 2.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
 |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09292 Neil1-DNA_bind], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06831 H2TH], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01149 Fapy_DNA_glyco]</span>
@@ Line 9: / Line 9: @@
 |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010979 Ipr010979], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015886 Ipr015886], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015371 Ipr015371], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015887 Ipr015887], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012319 Ipr012319]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF01149 PF01149], [http://pfam.sanger.ac.uk/family?acc=PF06831 PF06831], [http://pfam.sanger.ac.uk/family?acc=PF09292 PF09292]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106772 d1tdha1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106773 d1tdha2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=106774 d1tdha3]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q96FI4 Q96FI4]</span>
 |FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=NEIL1 NEIL1]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1tdh_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1tdh

From Proteopedia

Revision as of 07:09, 17 February 2009

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox