Template:STRUCTURE 1tyf

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 14:58, 17 February 2009

1tyf, resolution 2.30Å ()

Activity:

Endopeptidase Clp, with EC number 3.4.21.92

Domains:

clpP

Structural annotation:
Resources:	CATH : 1Tyfa00, 1Tyfb00, 1Tyfc00, 1Tyfd00, 1Tyfe00, 1Tyff00, 1Tyfg00, 1Tyfh00, 1Tyfi00, 1Tyfj00, 1Tyfk00, 1Tyfl00, 1Tyfm00, 1Tyfn00 InterPro : Ipr001907 Pfam : PF00574 SCOP : d1tyfa_, d1tyfb_, d1tyfc_, d1tyfd_, d1tyfe_, d1tyff_, d1tyfg_, d1tyfh_, d1tyfi_, d1tyfj_, d1tyfk_, d1tyfl_, d1tyfm_, d1tyfn_ UniProt : P0A6G7

Functional annotation:
Cellular component:	cytoplasm membrane fraction
Biological process:	response to stress proteolysis
Molecular function:	endopeptidase Clp activity serine-type endopeptidase activity peptidase activity hydrolase activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1tyf"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1tyf, resolution 2.30&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1tyf]], resolution 2.30&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Endopeptidase_Clp Endopeptidase Clp], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.92 3.4.21.92] </span>
 |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK00277 clpP]</span>
@@ Line 8: / Line 8: @@
 |COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0005624 | text = membrane fraction}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfA00 1Tyfa00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfB00 1Tyfb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfC00 1Tyfc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfD00 1Tyfd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfE00 1Tyfe00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfF00 1Tyff00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfG00 1Tyfg00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfH00 1Tyfh00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfI00 1Tyfi00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfJ00 1Tyfj00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfK00 1Tyfk00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfL00 1Tyfl00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfM00 1Tyfm00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfN00 1Tyfn00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001907 Ipr001907]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00574 PF00574]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30885 d1tyfa_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30886 d1tyfb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30887 d1tyfc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30888 d1tyfd_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30889 d1tyfe_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30890 d1tyff_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30891 d1tyfg_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30892 d1tyfh_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30893 d1tyfi_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30894 d1tyfj_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30895 d1tyfk_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30896 d1tyfl_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30897 d1tyfm_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30898 d1tyfn_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0A6G7 P0A6G7]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1tyf_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1tyf_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1tyf_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1tyf_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>E [x]</text>
+<name>jmb_1tyf_E</name>
+<title>toggle chain E</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>F [x]</text>
+<name>jmb_1tyf_F</name>
+<title>toggle chain F</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>G [x]</text>
+<name>jmb_1tyf_G</name>
+<title>toggle chain G</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>H [x]</text>
+<name>jmb_1tyf_H</name>
+<title>toggle chain H</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>I [x]</text>
+<name>jmb_1tyf_I</name>
+<title>toggle chain I</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>J [x]</text>
+<name>jmb_1tyf_J</name>
+<title>toggle chain J</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>K [x]</text>
+<name>jmb_1tyf_K</name>
+<title>toggle chain K</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>L [x]</text>
+<name>jmb_1tyf_L</name>
+<title>toggle chain L</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>M [x]</text>
+<name>jmb_1tyf_M</name>
+<title>toggle chain M</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>N [x]</text>
+<name>jmb_1tyf_N</name>
+<title>toggle chain N</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1tyf

From Proteopedia

Revision as of 14:58, 17 February 2009

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox