1nti
From Proteopedia
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{{STRUCTURE_1nti| PDB=1nti | SCENE= }} | {{STRUCTURE_1nti| PDB=1nti | SCENE= }} | ||
| - | + | ===RDC-refined NMR structure of bovine Acyl-coenzyme A Binding Protein, ACBP=== | |
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| - | ==Overview== | ||
| - | The 3D structure of bovine recombinant acyl-coenzyme A binding protein has been determined using multidimensional heteronuclear magnetic resonance spectroscopy in a study that combines investigations of 15N-labeled and unlabeled protein. The present structure determination is a refinement of the structure previously determined (Andersen, K.V. and Poulsen, F.M. (1992) J. Mol. Biol., 226, 1131-1141). It is based on 1096 distance restraints and 124 dihedral angle restraints of which 69 are for phi-angles and 8 for chiral centers and 47 for prochiral centers. The new experimental input for the structure determination has provided an increase of 263 distance restraints, 5 phi-angle restraints, and 32 chi-angle restraints in 2 chiral centers, and 31 prochiral centers restraining an additional 23 chi 1, 8 chi 2, and 1 chi 3 angles. The increase of 300 distance and dihedral angle restraints representing an additional 30% of input parameters for the structure determination has been shown to be in agreement with the first structure. A set of 29 structures has been calculated and each of the structures has been compared to a mean structure to give an atomic root mean square deviation of 0.44 +/- 0.12 A (1 A is 0.1 nm) for the backbone atoms C, C alpha, and N in the four alpha-helices A1, residues 4-15, A2, residues 21-36, A3, residues 51-62 and A4, residues 65-84. The loop-region of residues Gly45-Lys50 could not be defined by the restraints obtained by NMR. The program PRONTO has been used for the spectrum analysis, assignment of the individual nuclear Overhauser effects, the integration of the cross peaks, and the measurement of the coupling constants. The programs DIANA, X-PLOR and INSIGHT have been used in the structure calculations and evaluations. | ||
==About this Structure== | ==About this Structure== | ||
| - | 1NTI is a | + | 1NTI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NTI OCA]. |
==Reference== | ==Reference== | ||
| - | + | <ref group="xtra">PMID:8358232</ref><ref group="xtra">PMID:8503960</ref><references group="xtra"/> | |
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
| - | [[Category: Single protein]] | ||
[[Category: Kragelund, B B.]] | [[Category: Kragelund, B B.]] | ||
[[Category: Lerche, M H.]] | [[Category: Lerche, M H.]] | ||
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[[Category: Acbp family]] | [[Category: Acbp family]] | ||
[[Category: Four-helix-bundle]] | [[Category: Four-helix-bundle]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | |
| + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:39:03 2009'' | ||
Revision as of 17:39, 17 February 2009
RDC-refined NMR structure of bovine Acyl-coenzyme A Binding Protein, ACBP
About this Structure
1NTI is a 1 chain structure of sequence from Bos taurus. Full experimental information is available from OCA.
Reference
- Andersen KV, Poulsen FM. The three-dimensional structure of acyl-coenzyme A binding protein from bovine liver: structural refinement using heteronuclear multidimensional NMR spectroscopy. J Biomol NMR. 1993 May;3(3):271-84. PMID:8358232
- Kragelund BB, Andersen KV, Madsen JC, Knudsen J, Poulsen FM. Three-dimensional structure of the complex between acyl-coenzyme A binding protein and palmitoyl-coenzyme A. J Mol Biol. 1993 Apr 20;230(4):1260-77. PMID:8503960 doi:http://dx.doi.org/10.1006/jmbi.1993.1240
Page seeded by OCA on Tue Feb 17 19:39:03 2009
