Template:STRUCTURE 1nek

From Proteopedia

(Difference between revisions)

Revision as of 20:30, 17 February 2009

1nek, resolution 2.60Å ()

Ligands:

, , , , , , , , ,

Gene:

SDHA OR B0723 OR Z0877 OR ECS0748 (Escherichia coli), SDHB OR B0724 (Escherichia coli), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 (Escherichia coli), SDHD OR B0722 (Escherichia coli)

Domains:

SQR_TypeC_SdhD, Succ_DH_flav_C, sdhA, PRK05329, SQR_TypeC_SdhC, sdhB, PRK12575

Related:

1nen

Structural annotation:
Resources:	CATH : 1Nekb02, 1Nekb01, 1Nekc00 InterPro : Ipr013027, Ipr004112, Ipr003953, Ipr011281, Ipr003952, Ipr014006, Ipr001450, Ipr012285, Ipr004489, Ipr001041, Ipr006058, Ipr012675, Ipr009051, Ipr014361, Ipr000701, Ipr014314, Ipr014312 Pfam : PF00890, PF02910, PF01127 SCOP : d1neka2, d1neka3, d1neka1, d1nekb1, d1nekb2, d1nekc_, d1nekd_ UniProt : P0AC41, P07014, P69054, P0AC44

Functional annotation:
Cellular component:	membrane integral to membrane
Biological process:	electron transport tricarboxylic acid cycle transport
Molecular function:	protein binding oxidoreductase activity FAD binding oxidoreductase activity, acting on the CH-CH group of donors succinate dehydrogenase activity iron ion binding 4 iron, 4 sulfur cluster binding 3 iron, 4 sulfur cluster binding electron carrier activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal ion binding

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1nek"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1nek, resolution 2.60&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1nek]], resolution 2.60&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene>
 |GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
@@ Line 10: / Line 10: @@
 |COMPONENT={{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0016021 | text = integral to membrane}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekB02 1Nekb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekB01 1Nekb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekC00 1Nekc00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001450 Ipr001450], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006058 Ipr006058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80427 d1neka2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80428 d1neka3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80426 d1neka1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80429 d1nekb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80430 d1nekb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80431 d1nekc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80432 d1nekd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AC41 P0AC41], [http://ca.expasy.org/cgi-bin/niceprot.pl?P07014 P07014], [http://ca.expasy.org/cgi-bin/niceprot.pl?P69054 P69054], [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AC44 P0AC44]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1nek_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1nek_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1nek_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1nek_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1nek

From Proteopedia

Revision as of 20:30, 17 February 2009

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