This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3fik
From Proteopedia
| Line 1: | Line 1: | ||
| - | + | {{Seed}} | |
| + | [[Image:3fik.jpg|left|200px]] | ||
| - | The | + | <!-- |
| + | The line below this paragraph, containing "STRUCTURE_3fik", creates the "Structure Box" on the page. | ||
| + | You may change the PDB parameter (which sets the PDB file loaded into the applet) | ||
| + | or the SCENE parameter (which sets the initial scene displayed when the page is loaded), | ||
| + | or leave the SCENE parameter empty for the default display. | ||
| + | --> | ||
| + | {{STRUCTURE_3fik| PDB=3fik | SCENE= }} | ||
| - | + | ===Ternary complex-bound E.coli 70S ribosome. This entry consists of the 50S subunit.=== | |
| - | Description: Ternary complex-bound E.coli 70S ribosome. This entry consists of the 50S subunit. | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 4 14: | + | <!-- |
| + | The line below this paragraph, {{ABSTRACT_PUBMED_19122150}}, adds the Publication Abstract to the page | ||
| + | (as it appears on PubMed at http://www.pubmed.gov), where 19122150 is the PubMed ID number. | ||
| + | --> | ||
| + | {{ABSTRACT_PUBMED_19122150}} | ||
| + | |||
| + | ==About this Structure== | ||
| + | 3FIK is a 31 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIK OCA]. | ||
| + | |||
| + | ==Reference== | ||
| + | <ref group="xtra">PMID:19122150</ref><ref group="xtra">PMID:18462672</ref><ref group="xtra">PMID:18606549</ref><references group="xtra"/> | ||
| + | [[Category: Escherichia coli]] | ||
| + | [[Category: Baxter, W T.]] | ||
| + | [[Category: Ehrenberg, M.]] | ||
| + | [[Category: Frank, J.]] | ||
| + | [[Category: Grassucci, R A.]] | ||
| + | [[Category: LeBarron, J.]] | ||
| + | [[Category: Nissen, P.]] | ||
| + | [[Category: Schulten, K.]] | ||
| + | [[Category: Sengupta, J.]] | ||
| + | [[Category: Shaikh, T R.]] | ||
| + | [[Category: Trabuco, L G.]] | ||
| + | [[Category: Villa, E.]] | ||
| + | [[Category: 30]] | ||
| + | [[Category: 50]] | ||
| + | [[Category: 70]] | ||
| + | [[Category: Acetylation]] | ||
| + | [[Category: Antibiotic resistance]] | ||
| + | [[Category: Decoding]] | ||
| + | [[Category: Ef-tu]] | ||
| + | [[Category: Methylation]] | ||
| + | [[Category: Phosphoprotein]] | ||
| + | [[Category: Repressor]] | ||
| + | [[Category: Ribonucleoprotein]] | ||
| + | [[Category: Ribosomal protein]] | ||
| + | [[Category: Ribosome]] | ||
| + | [[Category: Rna-binding]] | ||
| + | [[Category: Rrna-binding]] | ||
| + | [[Category: Ternary complex]] | ||
| + | [[Category: Transcription]] | ||
| + | [[Category: Transcription regulation]] | ||
| + | [[Category: Transcription termination]] | ||
| + | [[Category: Translation regulation]] | ||
| + | [[Category: Trna]] | ||
| + | [[Category: Trna-binding]] | ||
| + | |||
| + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 4 14:53:31 2009'' | ||
Revision as of 12:53, 4 March 2009
Ternary complex-bound E.coli 70S ribosome. This entry consists of the 50S subunit.
Template:ABSTRACT PUBMED 19122150
About this Structure
3FIK is a 31 chains structure of sequences from Escherichia coli. Full crystallographic information is available from OCA.
Reference
- Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):1063-8. Epub 2009 Jan 2. PMID:19122150
- Trabuco LG, Villa E, Mitra K, Frank J, Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure. 2008 May;16(5):673-83. PMID:18462672 doi:10.1016/j.str.2008.03.005
- LeBarron J, Grassucci RA, Shaikh TR, Baxter WT, Sengupta J, Frank J. Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome. J Struct Biol. 2008 Oct;164(1):24-32. Epub 2008 Jun 18. PMID:18606549 doi:10.1016/j.jsb.2008.05.007
Page seeded by OCA on Wed Mar 4 14:53:31 2009
Categories: Escherichia coli | Baxter, W T. | Ehrenberg, M. | Frank, J. | Grassucci, R A. | LeBarron, J. | Nissen, P. | Schulten, K. | Sengupta, J. | Shaikh, T R. | Trabuco, L G. | Villa, E. | 30 | 50 | 70 | Acetylation | Antibiotic resistance | Decoding | Ef-tu | Methylation | Phosphoprotein | Repressor | Ribonucleoprotein | Ribosomal protein | Ribosome | Rna-binding | Rrna-binding | Ternary complex | Transcription | Transcription regulation | Transcription termination | Translation regulation | Trna | Trna-binding
