Template:STRUCTURE 1nek

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{{Structure
{{Structure
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1nek]], resolution 2.60&Aring; (<scene name='initialview01'>default scene</scene>)}}}
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1nek]], resolution 2.60&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+Oaa+A+589'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+Ca+A+590'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+Ca+B+311'>AC3</scene>, <scene name='pdbsite=AC4:Binding+Site+For+Residue+Fad+A+601'>AC4</scene>, <scene name='pdbsite=AC5:Binding+Site+For+Residue+Fes+B+302'>AC5</scene>, <scene name='pdbsite=AC6:Binding+Site+For+Residue+Sf4+B+303'>AC6</scene>, <scene name='pdbsite=AC7:Binding+Site+For+Residue+F3s+B+304'>AC7</scene>, <scene name='pdbsite=AC8:Binding+Site+For+Residue+Hem+C+305'>AC8</scene>, <scene name='pdbsite=AC9:Binding+Site+For+Residue+Uq2+D+306'>AC9</scene>, <scene name='pdbsite=BC1:Binding+Site+For+Residue+Cdn+C+308'>BC1</scene> and <scene name='pdbsite=BC2:Binding+Site+For+Residue+Eph+C+309'>BC2</scene>
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene>
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene>
|GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
|GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
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|RELATEDENTRY=[[1nen|1nen]]
|RELATEDENTRY=[[1nen|1nen]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nek OCA], [http://www.ebi.ac.uk/pdbsum/1nek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nek RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nek OCA], [http://www.ebi.ac.uk/pdbsum/1nek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nek RCSB]</span>
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|FUNCTION={{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0050660 | text = FAD binding}}{{GO|id=GO:0016627 | text = oxidoreductase activity, acting on the CH-CH group of donors}}{{GO|id=GO:0000104 | text = succinate dehydrogenase activity}}{{GO|id=GO:0005506 | text = iron ion binding}}{{GO|id=GO:0051539 | text = 4 iron, 4 sulfur cluster binding}}{{GO|id=GO:0051538 | text = 3 iron, 4 sulfur cluster binding}}{{GO|id=GO:0009055 | text = electron carrier activity}}{{GO|id=GO:0051536 | text = iron-sulfur cluster binding}}{{GO|id=GO:0051537 | text = 2 iron, 2 sulfur cluster binding}}{{GO|id=GO:0046872 | text = metal ion binding}}
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|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/1nekB01 1Nekb01], [http://www.cathdb.info/domain/1nekB02 1Nekb02], [http://www.cathdb.info/domain/1nekC00 1Nekc00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015939 Ipr015939], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017900 Ipr017900], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017896 Ipr017896], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006058 Ipr006058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80426 d1neka1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80427 d1neka2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80428 d1neka3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80429 d1nekb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80430 d1nekb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80431 d1nekc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80432 d1nekd_]<br>UniProt : [http://www.uniprot.org/uniprot/P0AC41 P0AC41], [http://www.uniprot.org/uniprot/P07014 P07014], [http://www.uniprot.org/uniprot/P69054 P69054], [http://www.uniprot.org/uniprot/P0AC44 P0AC44]</span>
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|PROCESS={{GO|id=GO:0006118 | text = electron transport}}{{GO|id=GO:0006099 | text = tricarboxylic acid cycle}}{{GO|id=GO:0006810 | text = transport}}
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|uPDB=1NEK|CONSURF={{!}}-
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|COMPONENT={{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0016021 | text = integral to membrane}}
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|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekB02 1Nekb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekB01 1Nekb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1nekC00 1Nekc00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001450 Ipr001450], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006058 Ipr006058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80427 d1neka2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80428 d1neka3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80426 d1neka1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80429 d1nekb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80430 d1nekb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80431 d1nekc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=80432 d1nekd_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AC41 P0AC41], [http://ca.expasy.org/cgi-bin/niceprot.pl?P07014 P07014], [http://ca.expasy.org/cgi-bin/niceprot.pl?P69054 P69054], [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AC44 P0AC44]</span>
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|CONSURF={{!}}-
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"

Revision as of 13:17, 2 April 2009

Drag the structure with the mouse to rotate
1nek, resolution 2.60Å ()
Sites: , , , , , , , , , and
Ligands: , , , , , , , , ,
Gene: SDHA OR B0723 OR Z0877 OR ECS0748 (Escherichia coli), SDHB OR B0724 (Escherichia coli), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 (Escherichia coli), SDHD OR B0722 (Escherichia coli)
Domains: SQR_TypeC_SdhD, Succ_DH_flav_C, sdhA, PRK05329, SQR_TypeC_SdhC, sdhB, PRK12575
Related: 1nen
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


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