NS5B

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	[[Image:1NB4_4domains.jpg]]		[[Image:1NB4_4domains.jpg]]
-	'''[[NS5B with active site carboxylates highlighted]]'''	+
		+	== '''NS5B with active site carboxylates highlighted'' ==
		+	'
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Revision as of 06:12, 20 April 2009

NS5B, the RNA Dependent RNA Polymerase from Hepatitis C Virus

spinqualitylabelsall models PDB ID 2HAI Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

Placeholder, type here.

Image:1NB4 4domains.jpg

'NS5B with active site carboxylates highlighted

'

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spinqualitylabelsall models PDB IDs 2HAI (protein) 1RTD (DNA) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

NS5B with B form DNA from HIV Reverse Transcriptase co-crystal model. DNA was modeled in by alignment of palms domain. A beta hairpin in the thumb domain has been moved to accommodate DNA, the hairpin is modeled into the minor groove, a possible binding site. Catalytic Mg2+ ions are modeled in green, these would be coordinated by the three aspartic acid carboxylates, (D220, D318 and D319).

The template strand is seen entering through a gap in the fingers domain, incoming nucleotide that extends the primer lines up with the NS5B active site and duplex DNA exits the enzyme through the large central hole.