User:Tilman Schirmer/Sandbox 19
From Proteopedia
< User:Tilman Schirmer(Difference between revisions)
| Line 1: | Line 1: | ||
==YfeA_ECOLI homology model== | ==YfeA_ECOLI homology model== | ||
| + | |||
| + | ==GGDEF domain== | ||
| + | template: PleD_CAUCR, [[1w25]] | ||
| + | |||
| + | <applet load='YfeA_ECOLI_GGDEF_1w25_r.pdb' scene='User:Tilman_Schirmer/Sandbox_19/Ggdef_domain/1' size='300' frame='true' align='right' caption='YfeA_ECOLI (GGDEF domain) homology model' /> | ||
| + | |||
| + | <scene name='User:Tilman_Schirmer/Sandbox_19/Ggdef_domain/1'>GGDEF domain</scene> | ||
| + | |||
| + | <scene name='User:Tilman_Schirmer/Sandbox_19/Ggdef_active/1'>GGDEF active site</scene> (R356, S364, V373, P397GSEL) | ||
| + | |||
| + | <scene name='User:Tilman_Schirmer/Sandbox_19/Ggdef_inhibition/1'>GGDEF inhibition site</scene> (P344, E347, Q388, E391, N419) | ||
==EAL domain== | ==EAL domain== | ||
Current revision
YfeA_ECOLI homology model
GGDEF domain
template: PleD_CAUCR, 1w25
|
(R356, S364, V373, P397GSEL)
(P344, E347, Q388, E391, N419)
EAL domain
template: 2r6o
|
(D520, N578, E610, D640, D641, D661, E697)
Alignment around D520EILAR probably wrong, E521 should be the correct metal ligand. Take this model with caution!!
