Template:STRUCTURE 1nek
From Proteopedia
(Difference between revisions)
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene> | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CDN:CARDIOLIPIN'>CDN</scene>, <scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=UQ2:UBIQUINONE-2'>UQ2</scene> | ||
|GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= SDHA OR B0723 OR Z0877 OR ECS0748 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHB OR B0724 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), SDHD OR B0722 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
- | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03494 SQR_TypeC_SdhD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02910 Succ_DH_flav_C], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK08958 sdhA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05329 PRK05329], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03499 SQR_TypeC_SdhC], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK05950 sdhB], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK12575 PRK12575]</span> | ||
|RELATEDENTRY=[[1nen|1nen]] | |RELATEDENTRY=[[1nen|1nen]] | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nek OCA], [http://www.ebi.ac.uk/pdbsum/1nek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nek RCSB]</span> | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nek OCA], [http://www.ebi.ac.uk/pdbsum/1nek PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nek RCSB]</span> | ||
- | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/1nekB01 1Nekb01], [http://www.cathdb.info/domain/1nekB02 1Nekb02], [http://www.cathdb.info/domain/1nekC00 1Nekc00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query= | + | |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/1nekB01 1Nekb01], [http://www.cathdb.info/domain/1nekB02 1Nekb02], [http://www.cathdb.info/domain/1nekC00 1Nekc00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014006 Ipr014006], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013027 Ipr013027], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011281 Ipr011281], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004112 Ipr004112], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003953 Ipr003953], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003952 Ipr003952], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015939 Ipr015939], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017900 Ipr017900], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017896 Ipr017896], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012675 Ipr012675], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012285 Ipr012285], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009051 Ipr009051], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006058 Ipr006058], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001041 Ipr001041], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR004489 Ipr004489], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000701 Ipr000701], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014314 Ipr014314], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014361 Ipr014361], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018495 Ipr018495], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014312 Ipr014312]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00890 PF00890], [http://pfam.sanger.ac.uk/family?acc=PF02910 PF02910], [http://pfam.sanger.ac.uk/family?acc=PF01127 PF01127]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80427 d1neka2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80428 d1neka3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80426 d1neka1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80430 d1nekb2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80429 d1nekb1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80431 d1nekc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=80432 d1nekd_]<br>UniProt : [http://www.uniprot.org/uniprot/P0AC41 P0AC41], [http://www.uniprot.org/uniprot/P07014 P07014], [http://www.uniprot.org/uniprot/P69054 P69054], [http://www.uniprot.org/uniprot/P0AC44 P0AC44]</span> |
|uPDB=1NEK|CONSURF={{!}}- | |uPDB=1NEK|CONSURF={{!}}- | ||
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] | {{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]] |
Revision as of 20:42, 10 June 2009
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1nek, resolution 2.60Å () | |||||||||
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Sites: | , , , , , , , , , and | ||||||||
Ligands: | , , , , , , , , , | ||||||||
Gene: | SDHA OR B0723 OR Z0877 OR ECS0748 (Escherichia coli), SDHB OR B0724 (Escherichia coli), SDHC OR CYBA OR B0721 OR Z0875 OR ECS0746 (Escherichia coli), SDHD OR B0722 (Escherichia coli) | ||||||||
Related: | 1nen | ||||||||
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Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||
Coordinates: | save as pdb, mmCIF, xml |