1ryq
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(New page: 200px<br /><applet load="1ryq" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ryq, resolution 1.38Å" /> '''Putative DNA-directe...)
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Revision as of 21:24, 24 November 2007
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Putative DNA-directed RNA polymerase, subunit e from Pyrococcus Furiosus Pfu-263306-001
Overview
The determination of protein structures on a genomic scale requires both, computing capacity and efficiency increases at many stages along the, complex process. By combining bioinformatics workflow-management, techniques, cluster-based computing and popular crystallographic, structure-determination software packages, an efficient and powerful new, tool for structural biology/genomics has been developed. Using the, workflow manager and a simple web interface, the researcher can, in a few, easy steps, set up hundreds of structure-determination jobs, each using a, slightly different set of program input parameters, thus efficiently, screening parameter space for the optimal input-parameter combination, i.e. a set of parameters that leads to a successful structure, determination. Upon completion, results from the programs are harvested, analyzed, sorted based on success and presented to the user via the web, interface. This approach has been applied with success in more than 30, cases. Examples of successful structure determinations based on, single-wavelength scattering (SAS) are described and include cases where, the 'rational' crystallographer-based selection of input parameters values, had failed.
About this Structure
1RYQ is a Single protein structure of sequence from Pyrococcus furiosus with ZN as ligand. Full crystallographic information is available from OCA.
Reference
Parameter-space screening: a powerful tool for high-throughput crystal structure determination., Liu ZJ, Lin D, Tempel W, Praissman JL, Rose JP, Wang BC, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):520-7. Epub 2005, Apr 20. PMID:15858261
Page seeded by OCA on Sat Nov 24 23:31:49 2007
Categories: Pyrococcus furiosus | Single protein | Adams, M.W.W. | Brereton, P.S. | Chen, L. | II, F.L.Poole. | III, W.B.Arendall. | Izumi, M. | Jr., F.E.Jenney. | Lee, H.S. | Liu, Z.J. | Richardson, D.C. | Richardson, J.S. | Rose, J.P. | SECSG, Southeast.Collaboratory.for.Structural.Genomics. | Shah, A. | Shah, C. | Sugar, F.J. | Tempel, W. | Wang, B.C. | ZN | Protein structure initiative | Psi | Rna polymerase | Secsg | Southeast collaboratory for structural genomics | Structural genomics | Zinc
