This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1arh

From Proteopedia

Revision as of 08:01, 20 March 2008 by OCA (Talk | contribs)
Jump to: navigation, search


PDB ID 1arh

Drag the structure with the mouse to rotate
, resolution 2.3Å
Ligands:
Activity: Aspartate transaminase, with EC number 2.6.1.1
Coordinates: save as pdb, mmCIF, xml



ASPARTATE AMINOTRANSFERASE, Y225R/R386A MUTANT


Overview

The electron distribution in the coenzyme-substrate adduct of aspartate aminotransferase was changed by replacing active-site Arg386 with alanine and introducing a new arginine residue nearby. [Y225R, R386A]Aspartate aminotransferase decarboxylates L-aspartate to L-alanine (kcat = 0.04 s-1), while its transaminase activity towards dicarboxylic amino acids is decreased by three orders of magnitude (kcat = 0.19 s-1). Molecular-dynamics simulations based on the crystal structure of the mutant enzyme suggest that a new hydrogen bond to the imine N atom of the pyridoxal-5'-phosphate- aspartate adduct and an altered electrostatic potential around its beta-carboxylate group underlie the 650,000-fold increase in the ratio of beta-decarboxylase/transaminase activity.

About this Structure

1ARH is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Changing the reaction specificity of a pyridoxal-5'-phosphate-dependent enzyme., Graber R, Kasper P, Malashkevich VN, Sandmeier E, Berger P, Gehring H, Jansonius JN, Christen P, Eur J Biochem. 1995 Sep 1;232(2):686-90. PMID:7556224

Page seeded by OCA on Thu Mar 20 10:01:24 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools