Sandbox Reserved 1474

From Proteopedia

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This Sandbox is Reserved from November 5 2018 through January 1, 2019 for use in the course "CHEM 4923: Senior Project taught by Christina R. Bourne at the University of Oklahoma, Norman, USA. This reservation includes Sandbox Reserved 1471 through Sandbox Reserved 1478.

To get started: Click the edit this page tab at the top. Save the page after each step, then edit it again. Click the 3D button (when editing, above the wikitext box) to insert Jmol. show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page. Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc. More help: Help:Editing

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Contents 1 Sandpage of antimeth scFv 2 Function 3 Disease 4 Relevance 5 Structural highlights 6 References

Sandpage of antimeth scFv

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Scene 4LAQ

spinqualitylabelsall models 4LAQ Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

spinqualitylabelsall models scFv6H4 heavy chain Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

spinqualitylabelsall models scFv6H4 light chain Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

residue <Structureload='4LAQ' size='350' frame='true' align='right' caption='4LAQ residue' scene='residue of pdb deposit 4LAQ' />

trimmers

spinqualitylabelsall models trimmers Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

Scene 3GKZ ligand Scene 3GKZ hydrophobic interaction between ligand and residues on LDRs Scene 3GKZ cationic Nitrogen with residual hydrogen bonds Scene 3GKZ solevent hydrogen bonds stabilizing the binding

Scene 4LAR Scene 4LAS

You may include any references to papers as in: the use of JSmol in Proteopedia ^[1] or to the article describing Jmol ^[2] to the rescue.

Function

Disease

Relevance

Structural highlights

This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>

References

1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644