This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ddo

From Proteopedia

Revision as of 11:12, 30 October 2007 by OCA (Talk | contribs)
Jump to: navigation, search

1ddo, resolution 3.1Å

Drag the structure with the mouse to rotate

REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP

Overview

D-Amino acid oxidase (DAAO) is the prototype of the flavin-containing, oxidases. It catalyzes the oxidative deamination of various D-amino acids, ranging from D-Ala to D-Trp. We have carried out the X-ray analysis of, reduced DAAO in complex with the reaction product imino tryptophan (iTrp), and of the covalent adduct generated by the photoinduced reaction of the, flavin with 3-methyl-2-oxobutyric acid (kVal). These structures were, solved by combination of 8-fold density averaging and least-squares, refinement techniques. The FAD redox state of DAAO crystals was assessed, by single-crystal polarized absorption microspectrophotometry. iTrp binds, to the reduced enzyme with the N, C alpha, C, and C beta atoms positioned, 3.8 A from the re side of the flavin. The indole side chain points ... [(full description)]

About this Structure

1DDO is a [Single protein] structure of sequence from [Sus scrofa] with FAD, ITR and DTR as [ligands]. Active as [D-amino-acid oxidase], with EC number [1.4.3.3]. Structure known Active Sites: FAA, FAB, FAC, FAD, FAE, FAF, FAG and FAH. Full crystallographic information is available from [OCA].

Reference

Active site plasticity in D-amino acid oxidase: a crystallographic analysis., Todone F, Vanoni MA, Mozzarelli A, Bolognesi M, Coda A, Curti B, Mattevi A, Biochemistry. 1997 May 13;36(19):5853-60. PMID:9153426

Page seeded by OCA on Tue Oct 30 13:17:09 2007

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools