Ribosomal protein S19

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Image:RPS19.png
Crystal Structure of Ribosomal protein S19 from 2zm6, chain S

Template:STRUCTURE 2zm6












Ribosomal protein S19 (RPS19) is one of the 22 proteins which belong to the of the bacterial ribosome. It forms a complex with RPS13 that binds to 16S RRNA. The images at the left and at the right correspond to one representative RPS19, i.e. the crystal structure of Ribosomal protein S19 from Thermus thermophilus (2zm6, chain S).




3D Structures of Ribosomal protein S19

Update December 2011

S19

2v7f – RPS19 – Pyroccocus abyssi
1qkh, 1qkf - TtRPS19 - Thermus thermophilus – NMR

S19 in small ribosomal subunit

2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS19 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq, 3pys, 3pyu - TtRPS19 in 30S ribosomal subunit+16S RRNA+RNA fragment
3kc4 – EcRPS19 in 30S ribosomal subunit – Escherichia coli
3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora, 3oaq, 3oar - EcRPS19 in 30S ribosomal subunit+16S RRNA
1i94, 1fka - TtRPS19 in 30S ribosomal subunit+16S RRNA
1p87, 1p6g - EcRPS19 in 30S ribosomal subunit+16S RRNA – Cryo-EM
3bbn - RPS19 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach


S19 in small + large ribosomal subunit

1ml5 - EcRPS19 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM


S19 in small ribosomal subunit+ chain release factor

3mr8, 3ms0 – TtRPS19 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a, 3d5c - TtRPS19 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
3zvo – TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3
2b64 - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - TtRPS19 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - TtRPS19 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA


S19 in small ribosomal subunit+tRNA+mRNA

2hgi - TtRPS19 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
2hgp - TtRPS19 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2i2p, 2i2u - EcRPS19 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2hgr - TtRPS19 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – TtRPS19 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1pns – EcRPS19 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
1xnq, 1xnr - TtRPS19 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA


S19 in small ribosomal subunit+A-site tRNA

2uxd, 2uxc - TtRPS19 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - TtRPS19 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - TtRPS19 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - TtRPS19 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - TtRPS19 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA


S19 in small ribosomal subunit+P-site tRNA

3i8g - TtRPS19 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
1ibk - TtRPS19 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
2wwl - EcRPS19 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli
3i1q - EcRPS19 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA
3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA


S19 in small ribosomal subunit+A-site tRNA+P-site tRNA

1ibl, 1ibm - TtRPS19 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA


S19 in small ribosomal subunit+P-site tRNA+E-site tRNA

2ow8 - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA


S19 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA

2gy9, 2gyb - EcRPS19 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
1jgo, 1jgp, 1jgq, 1gix - TtRPS19 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
3e1a, 3e1c - EcRPS19 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA


S19 in small ribosomal subunit + antibiotics

1i95, 1i97, 2hhh, 2f4v - TtRPS19 in 30S ribosomal subunit+16S RRNA+antibiotic
1hnx, 1hnw, 1hnz, 1fjg – TtRPS19 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic
2qbb, 2qb9, 1vs5, 1vs7 , 2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0, 2z4k, 2z4m - EcRPS19 in 30S ribosomal subunit+16S RRNA+antibiotic
2j00, 2j02 - TtRPS19 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
2wdg, 2wdh, 2wdk, 2wdm - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin
3knj, 3knh - TtRPS19 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin
3knl, 3knn - TtRPS19 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin


S19 in small ribosomal subunit + ribosome recycling factor

2qbd, 2qbf – EcRPS19 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor
3r8n, 3r8o – EcRPS19 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA
2qbh, 2qbj - EcRPS19 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
2v46, 2v48 - TtRPS19 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet


S19 in small ribosomal subunit + elongation factor

2wri, 2wrk, 2xsy, 2xuy - TtRPS19 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - TtRPS19 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - TtRPS19 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
3izv – EcRPS19 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU
3izw – EcRPS19 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU
2y0u, 2y0w, 2y0y, 2y12, 2y10, 2y18, 2y14, 2y16 – TtRPS19 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU
2xqd – TtRPS19 in 30S ribosomal subunit+THX+E-site tRNA+mRNA +16S RRNA+elongation factor TU-B
3fih - EcRPS19 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
3huw, 3huy - Ttv in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P
1s1h - yRPS19 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast

S19 in small ribosomal subunit + translation initiation factor

1i96 - TtRPS19 in 30S ribosomal subunit+THX+IF3+16S RRNA
1hr0 - TtRPS19 in 30S ribosomal subunit+THX+IF+16S RRNA


S19 in small ribosomal subunit + various proteins

3kiq, 3kis, 3kiu, 3kix - TtRPS19 in 30S ribosomal subunit+toxin RelE+16S RRNA
1voq, 1vos, 1vov, 1vox, 1voz - EcRPS19 in 30S ribosomal subunit+protein Y+16S RRNA
2xfz, 2xg1 - TtRPS19 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
3a1p - TtRPS19+ ribosome maturation factor RIMM
3j00 – EcRPS19 + 16S RRNA + FTSQ + apolipoprotein A-I
2ykr – EcRPS19 + 16S RRNA + GMPPNP + GTPase RSGA
4a2i – EcRPS19 + 16S RRNA + GTPase RSGA – Cryo EM

S19 in small 40S ribosomal subunit + various proteins

3iz6 – RPS19 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM
3o2z, 3o30 – yRPS19 in 40S ribosomal subunit+18S RRNA+RACK1
3jyv - RPS19 in 40S ribosomal subunit+tRNA Phe+RACK1+18S RRNA – EM – Thermomyces lanuginosus

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Michal Harel, Alexander Berchansky, Joel L. Sussman

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