1n48
From Proteopedia
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Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion
Overview
Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4) is a DinB homolog that, belongs to the recently described Y-family of DNA polymerases, which are, best characterized by their low-fidelity synthesis on undamaged DNA, templates and propensity to traverse normally replication-blocking, lesions. Crystal structures of Dpo4 in ternary complexes with DNA and an, incoming nucleotide, either correct or incorrect, have been solved at 1.7, A and 2.1 A resolution, respectively. Despite a conserved active site and, a hand-like configuration similar to all known polymerases, Dpo4 makes, limited and nonspecific contacts with the replicating base pair, thus, relaxing base selection. Dpo4 is also captured in the crystal, translocating two template bases to the active site at once, suggesting a, possible mechanism for bypassing thymine dimers.
About this Structure
1N48 is a Single protein structure of sequence from Sulfolobus solfataricus with CA and ATP as ligands. Active as DNA-directed DNA polymerase, with EC number 2.7.7.7 Full crystallographic information is available from OCA.
Reference
Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication., Ling H, Boudsocq F, Woodgate R, Yang W, Cell. 2001 Oct 5;107(1):91-102. PMID:11595188
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