1o5m
From Proteopedia
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Structure of FPT bound to the inhibitor SCH66336
Overview
Crystallographic and thermodynamic studies of farnesyl protein transferase, (FPT) complexed with novel tricyclic inhibitors provide insights into the, observed SAR for this unique class of nonpeptidic FPT inhibitors. The, crystallographic structures reveal a binding pattern conserved across the, mono-, di-, and trihalogen series. In the complexes, the tricycle spans, the FPT active site cavity and interacts with both protein atoms and the, isoprenoid portion of bound farnesyl diphosphate. An amide carbonyl, common to the tricyclic compounds described here, participates in a, water-mediated hydrogen bond to the protein backbone. Ten high-resolution, crystal structures of inhibitors complexed with FPT are reported. Included, are crystallographic data for FPT complexed with SCH 66336, a compound, currently undergoing clinical trials as an anticancer agent (SCH 66336, 4-[2-[4-(3,10-dibromo-8-chloro-6,11-dihydro-5H-benzo[5, 6]cyclohepta[1, 2-b]pyridin-11-yl)-1-piperidinyl]-2-oxoethyl]-1-piperidinecarbo xamide )., Thermodynamic binding parameters show favorable enthalpies of complex, formation and small net entropic contributions as observed for, 4-[2-[4-(3,10-dibromo-8-chloro-6,11-dihydro-11H-benzo[5, 6]cyclohepta[1, 2-b]pyridin-11-ylidene)-1-piperidinyl]-2-oxoethyl]pyridine N-oxide where, DeltaH degrees bind = -12.5 kcal/mol and TDeltaS degrees bind = -1.5, kcal/mol.
About this Structure
1O5M is a Protein complex structure of sequences from Rattus norvegicus with ZN, FPP and 336 as ligands. Full crystallographic information is available from OCA.
Reference
Tricyclic farnesyl protein transferase inhibitors: crystallographic and calorimetric studies of structure-activity relationships., Strickland CL, Weber PC, Windsor WT, Wu Z, Le HV, Albanese MM, Alvarez CS, Cesarz D, del Rosario J, Deskus J, Mallams AK, Njoroge FG, Piwinski JJ, Remiszewski S, Rossman RR, Taveras AG, Vibulbhan B, Doll RJ, Girijavallabhan VM, Ganguly AK, J Med Chem. 1999 Jun 17;42(12):2125-35. PMID:10377218
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