Ribosomal protein THX
From Proteopedia
Ribosomal protein THX is one of the 22 proteins which belong to the of the bacterial ribosome. It stabilizes a number of RNA elements and belongs to the RPS31E family. The images at the left and at the right correspond to one representative Ribosomal protein THX, i.e. the crystal structure of Ribosomal protein THX from Thermus thermophilus (2zm6, chain V).
3D Structures of Ribosomal protein THX
Update July 2012
THX in small ribosomal subunit
2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3oi0, 3oi4, 3oto, 3uxs, 3uxt - TtTHX in 30S ribosomal subunit+16S RRNA - Thermus thermophilus
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub - TtTHX in 30S ribosomal subunit+16S RRNA+RNA fragment
1i94 - TtTHX in 30S ribosomal subunit+16S RRNA
3pyn, 3pyq, 3pys, 3pyu - TtTHX in 30S ribosomal subunit+16S RRNA + RNA domain 3
THX in small + large ribosomal subunit
1ml5 - EcTHX in 30S ribosomal subunit+50S ribosomal subunit+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
THX in small ribosomal subunit+ chain release factor
3mr8, 3ms0 – TtTHX in 30S ribosomal subunit+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a, 3d5c - TtTHX in 30S ribosomal subunit+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
2b64 - TtTHX in 30S ribosomal subunit+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - TtTHX in 30S ribosomal subunit+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - TtTHX in 30S ribosomal subunit+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - TtTHX in 30S ribosomal subunit+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
3zvo – TtTHX in 30S ribosomal subunit+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3
THX in small ribosomal subunit+tRNA+mRNA
2hgi - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
2hgp - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
3t1h, 3t1y - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA
3tvf, 3tvg, 3uyd, 3uyf - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA
3uz6, 3uz7, 3uzg, 3uzi - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA
2hgr - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – TtTHX in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1xnq, 1xnr - TtTHX in 30S ribosomal subunit+mRNA+tRNA anticodon+16S RRNA
THX in small ribosomal subunit+A-site tRNA
2uxd, 2uxc - TtTHX in 30S ribosomal subunit+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - TtTHX in 30S ribosomal subunit+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - TtTHX in 30S ribosomal subunit+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - TtTHX in 30S ribosomal subunit+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - TtTHX in 30S ribosomal subunit+A-site mRNA GGGU+tRNA anticodon+16S RRNA
THX in small ribosomal subunit+P-site tRNA
3i8g - TtTHX in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - TtTHX in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
1ibk - TtTHX in 30S ribosomal subunit+P-site mRNA fragment +16S RRNA
THX in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtTHX in 30S ribosomal subunit+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
THX in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtTHX in 30S ribosomal subunit+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - TtTHX in 30S ribosomal subunit+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - TtTHX in 30S ribosomal subunit+P-site tRNA+E-site tRNA+mRNA +16S RRNA
THX in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
1jgo, 1jgp, 1jgq, 1gix - TtTHX in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
THX in small ribosomal subunit + antibiotics
1i95, 1i97, 3ohy, 3oi2, 2hhh - TtTHX in 30S ribosomal subunit+16S RRNA+ antibiotic
1hnw, 1hnx, 1hnz , 1fjg- TtTHX in 30S ribosomal subunit+16S RRNA+mRNA fragment+ antibiotic
2qbb, 2qb9 - EcTHX in 30S ribosomal subunit+16S RRNA+antibiotic
2j00, 2j02, 2wdg, 2wdh, 2wdk, 2wdm, 3knj, 3knh, 3knl, 3knn - TtTHX in 30S ribosomal subunit+16S RRNA+ antibiotic -P-site tRNA fMet+E-site tRNA Phe+mRNA
3uz3, 3uz4 - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin
3uzl, 3uzm - TtTHX in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
THX in small ribosomal subunit + ribosome recycling factor
2v46, 2v48 - TtTHX in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
THX in small ribosomal subunit + elongation factor
2wri, 2wrk - TtTHX in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - TtTHX in 30S ribosomal subunit+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - TtTHX in 30S ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
4abr – TtTHX in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU
3huw, 3huy - TtTHX in 30S ribosomal subunit+tRNA-Met+mRNA +16S RRNA+elongation factor P
2y0u, 2y0w, 2y0y, 2y0x - TtTHX in 30S ribosomal subunit+A-site tRNA +E-site tRNA+mRNA codon+16S RRNA+elongation factor TU
2y10, 2y12, 2y14, 2y16, 2y18 - TtTHX in 30S ribosomal subunit+A-site tRNA+P-site tRNA +mRNA codon+16S RRNA+elongation factor TU
THX in small ribosomal subunit + translation initiation factor
1i96 - TtTHX in 30S ribosomal subunit+IF3+16S RRNA
1hr0 - TtTHX in 30S ribosomal subunit+IF+16S RRNA
THX in small ribosomal subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - TtTHX in 30S ribosomal subunit+toxin RelE+16S RRNA
2xfz, 2xg1 - TtTHX in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
4dh9, 4dhb - TtTHX in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ
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Alexander Berchansky, Michal Harel, Jaime Prilusky, Joel L. Sussman
