Ribosomal protein L1
From Proteopedia
Ribosomal protein L1 (RPL1) is one of the 34 proteins which belong to the of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. It is known to bind to 23S or 28S RRNA. In the archaea family it is named L1P. The images at the left and at the right correspond to one representative RPL1, i.e. the crystal structure of Ribosomal protein L1 from Thermus thermophilus (2xg0, chain C).
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3D Structures of Ribosomal protein L1
Updated February 2013
RPL1
2oum, 2ov7 - TtRPL1 domain 1 – Thermus thermophilus
4f9t – TtRPL1
2hw8, 1zho - TtRPL1+mRNA fragment
1ad2, 3tg8, 3u42 – TtRPL1 (mutant)
3u4m, 3u56, 3umy - TtRPL1 (mutant) + RNA
1u63 - MjRPL1P+mRNA fragment – Methanocaldococcus jannaschii
1i2a, 1cjs - MjRPL1P
1dwu - RPL1 – Methanococcus thermolithotrophicus
3qoy – RPL1 – Aquifex aeolicus
1mzp – RPL1P+23S RRNA fragment – Sulfolobus acidocaldarius
2vpl - TtRPL1 residues 2-68 160-229+mRNA fragment
L1 in 50S subunit+RNA
2xg0, 2xg2, 3kir, 3kit, 3kiw, 3kiy – TtRPL1 in 50S subunit+RNA fragments
2x9s, 2x9u, 3kni, 3knk, 3knm, 3kno, 2wrj, 2wrl, 2wro, 2wrr, 3hux, 3huz, 2wh2, 2wh4, 2wdi, 2wdj, 2wdl, 2wdn, 1vsp, 2v47, 2v49, 1vsa, 2hgj, 2hgq, 2hgu, 2j01, 2j03, 1yl3, 1giy, 2y0v, 2y0x, 2y0z, 2y11, 2y13, 2y15, 2y17, 2y19, 3pyo, 3pyr, 3pyt, 3pyv, 3zvp - TtRPL1 in 50S subunit+5S RRNA+23S RRNA
3fin - TtRPL1 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
2wwq – EcRPL1 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – Escherichia coli
3e1b, 3e1d, 1vor, 1vou, 1vow, 1voy, 1vp0, 1pnu, 1pny - EcRPL1P in 50S subunit+5S RRNA+23S RRNA
3fik, 2gya, 2gyc, 3j0t, 3j0w, 3j0y, 3j11, 3j12, 3j14 - EcRPL1 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
3kcr, 3j01 - EcRPL1 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase - Cryo-EM
2rdo - EcRPL1 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
3bbo - RPL1 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach
3j21 – RPL1 in 50S subunit – Pyrococcus furiosus
L1 in 60S subunit
3jyw - RPL1 in 60S subunit – Thermomyces lanuginosus – Cryo-EM
3izr, 3izt, 3izu, 3izs - RPL1 in 60S subunit – wheat
2ftc - RPL1 in 60S subunit+16S RRNA - bovine
1s1h, 1s1i - yRPL1 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast
3o58, 3o5h - yRPL1 in 60S ribosomal subunit+5.8S RRNA + 5S RRNA + 25S RRNA
L1 in part of the large ribosomal subunit
487d – TtRPL1+RPL2+RPL6+RPL9+RPL11+RPL14+RPL25 - Cryo-EM
2noq – yRPL1+RPL11+RPS5+18S RRNA+Cricket paralysis virus IRES RNA
L1 in large + small ribosomal subunit
1ml5 - EcRPL1 in 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – EM
L1 in 50S subunit + various proteins
2om7 – TtRPL1+RPS2+RPS12+tRNA+16S RRNA fragments+23S RRNA fragments+EF-G
L1 in 50S subunit + antibiotic
3pio, 3pip - RPL1 in 50S subunit+5S RRNA+23SRRNA+antibiotic - Deinococcus radiodurans
