6msf

From Proteopedia

F6 APTAMER MS2 COAT PROTEIN COMPLEX

Overview

The crystal structure, at 2.8 A resolution, of an RNA aptamer bound to, bacteriophage MS2 coat protein has been determined. It provides an, opportunity to compare the interactions of MS2 coat protein and wild type, operator with those of an aptamer, whose secondary structure differs from, the wild type RNA in having a three-base loop (compared to a tetraloop), and an additional base pair between this loop and the sequence-specific, recognition element in the stem. The RNA binds in the same location on the, coat protein as the wild type operator and maintains many of the same, RNA-protein interactions. In order to achieve this, the RNA stem loop, undergoes a concerted rearrangement of the 3' side while leaving the 5', side and the loop interactions largely unchanged, illustrating the ability, of RNA to present similar molecular recognition surfaces from distinct, primary and secondary structures.

About this Structure

6MSF is a Single protein structure of sequence from Enterobacterio phage ms2. Full crystallographic information is available from OCA.

Reference

Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution., Convery MA, Rowsell S, Stonehouse NJ, Ellington AD, Hirao I, Murray JB, Peabody DS, Phillips SE, Stockley PG, Nat Struct Biol. 1998 Feb;5(2):133-9. PMID:9461079

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