Ribosomal protein S17
From Proteopedia
Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the of the bacterial ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, i.e. the crystal structure of Ribosomal protein S17 from Thermus thermophilus (2zm6, chain Q).
3D Structures of Ribosomal protein S17
Updated on 20-October-2013
S17
1rip – TtRPS17 – NMR - Geobacillus stearothermophilus
1rq6 – RPS17 - NMR- Methanothermobacter
S17 in small ribosomal subunit
2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq, 3pys, 3pyu - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment
3kc4 – EcRPS17 in 30S ribosomal subunit – Escherichia coli
3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora - EcRPS17 in 30S ribosomal subunit+16S RRNA
1i94, 1fka, 3uxs, 3uxt, 4dr1 - TtRPS17 in 30S ribosomal subunit+16S RRNA
4duy, 4duz, 4dv0, 4dv1, 4dv2, 4dv3, 4dv4, 4dv5, 4dv6, 4dv7 - TtRPS17 in 30S ribosomal subunit+16S RRNA (mutant)
4dr4, 4b3m, 4b3r, 4b3s, 4b3t – TtRPS17 in 30S ribosomal subunit+16S RRNA + mRNA
1p87, 1p6g - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM
3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
S17 in small + large ribosomal subunit
1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
1eg0 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit + tRNA f-Met + +23S RRNA fragments +16S RRNA fragments – Cryo EM
S17 in small ribosomal subunit+ chain release factor (RF)
3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a, 3d5c - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
3zvo – TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3
2b64 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
3uoq - EcRPS17 + 16S RRNA + mRNA + peptide chain release factor
4kfh, 4kfk - TtRPS17 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet
S17 in small ribosomal subunit+tRNA+mRNA
2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
4l6k, 4l6m - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA
2hgp - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
3t1h, 3t1y - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA
3tvf, 3tvg, 3uyd, 3uyf - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA
3zn7, 3znd - TtRPS17 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA
3uz6, 3uz7, 3uzg, 3uzi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA
2i2p, 2i2u - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2hgr, 3v6u, 3v6v, 4ej9, 4eja - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1pns – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
3j0u, 3j0v, 3j0x, 3j0z, 3j10, 3j20 – EcRPS17 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM
3j13 – EcRPS17 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM
1xnq, 1xnr - TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
4gkj, 4gkk - TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met
4jv5, 4jya, 4k0k, 4k0l - TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA
S17 in small ribosomal subunit+A-site tRNA
2uxd, 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
S17 in small ribosomal subunit+P-site tRNA
3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
1ibk - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
2wwl - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli
3i1q - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA
3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
S17 in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
S17 in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
1jgo, 1jgp, 1jgq, 1gix - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
4k0p - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA
3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
S17 in small ribosomal subunit + antibiotics
1i95, 1i97, 2hhh, 2f4v, 4dr2, 4dr3 - TtRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic
1hnx, 1hnw, 1hnz, 1fjg, 4aqy, 4dr5, 4dr6, 4dr7, 4khp – TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic
2qbb, 2qb9, 1vs5, 1vs7 , 2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0, 2z4k, 2z4m, 3oaq, 3oar - EcRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic
3sfs – EcRPS17 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic
4gaq, 4gas – EcRPS17 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic
2j00, 2j02 - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
2wdg, 2wdh, 2wdk, 2wdm - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin
3knj, 3knh, 3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics
3uz3, 3uz4 - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin
4g5k, 4g5m, 4g5t, 4g5v - TtRPS17 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics
3uzl, 3uzm - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
S17 in small ribosomal subunit + ribosome recycling factor
2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor
3r8n, 3r8o, 4gd1, 4gd2 – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA
2qbh, 2qbj - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
S17 in small ribosomal subunit + elongation factor (EF)
2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
4abr - TtRPS17 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU
3izv – EcRPS17 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU
3j18 - EcRPS17 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM
3izw – EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU
2y0u, 2y0w, 2y0y, 2y12, 2y10, 2y18, 2y14, 2y16 – TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU
3fih - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P
4b8f, 4b8h - TtRPS17 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+EF-G
4btc, 4kdg, 4kdj - TtRPS17 in 30S ribosomal subunit+THX+RNA +16S RRNA+EF-G
4juw - TtRPS17 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +EF-G
4kbt, 4kbv, 4kcy, 4kd0, 4kd8, 4kda - TtRPS17 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + EF-G
4kiy, 4kj0, 4kj2, 4kj4, 4kj6, 4kj8, 4kja, 4kjc - EcRPS17 in 30S ribosomal subunit +16S RRNA + viomycin + EF-G
S17 in small ribosomal subunit + translation initiation factor
1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA
1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA
S17 in small ribosomal subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA
4dh9, 4dhb - TtRPS17 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ
1voq, 1vos, 1vov, 1vox, 1voz - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA
3j36 - EcRPS17 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM
2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA
3j00 – EcRPS17 + 16S RRNA + FTSQ + apolipoprotein A-I
2ykr – EcRPS17 + 16S RRNA + GMPPNP + GTPase RSGA
4adv - EcRPS17 + 16S RRNA + methyltransferase – Cryo EM
3v22, 3v24, 3v26, 3v28 – TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + modulation factor
3v2c, 3v2e – TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor
4a2i – EcRPS17 + 16S RRNA + GTPase RSGA – Cryo EM
S17 in small 40S ribosomal subunit + various proteins
2xzm, 2xzn – RPS17 in 40S ribosomal subunit+18S RRNA+RACK1 – Tetrahymena thermophila
3iz6 - RPS17 in 40S ribosomal subunit +RACK1+18S RRNA – wheat – Cryo-EM
3izb - yRPS17 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM
3u5c, 3u5g - yRPS17 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1
3o2z, 3o30 - yRPS17 in 40S ribosomal subunit +RACK1
3j38 - RPS17 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – Drosophila melanogaster – Cryo-EM
3j3a - RPS17 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM
4kzx - rRPS17 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM
4kzy - rRPS17 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM
4kzz - rRPS17 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM
S17 in part of small ribosomal subunit
3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA
1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment
