| Structural highlights
3rpg is a 3 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Ligands: |
| Related: | 2h0d, 2ckl, 2fuh, 1x23 |
Gene: | UBE2D3, UBC5C, UBCH5C (Homo sapiens), BMI1, PCGF4, RNF51 (Homo sapiens), RNF2, BAP1, DING, HIPI3, RING1B (Homo sapiens) |
Activity: | Ubiquitin--protein ligase, with EC number 6.3.2.19 |
Resources: | FirstGlance, OCA, RCSB, PDBsum |
Publication Abstract from PubMed
The Polycomb repressive complex 1 (PRC1) mediates gene silencing, in part by monoubiquitination of histone H2A on lysine 119 (uH2A). Bmi1 and Ring1b are critical components of PRC1 that heterodimerize via their N-terminal RING domains to form an active E3 ubiquitin ligase. We have determined the crystal structure of a complex between the Bmi1/Ring1b RING-RING heterodimer and the E2 enzyme UbcH5c and find that UbcH5c interacts with Ring1b only, in a manner fairly typical of E2-E3 interactions. However, we further show that the Bmi1/Ring1b RING domains bind directly to duplex DNA through a basic surface patch unique to the Bmi1/Ring1b RING-RING dimer. Mutation of residues on this interaction surface leads to a loss of H2A ubiquitination activity. Computational modelling of the interface between Bmi1/Ring1b-UbcH5c and the nucleosome suggests that Bmi1/Ring1b interacts with both nucleosomal DNA and an acidic patch on histone H4 to achieve specific monoubiquitination of H2A. Our results point to a novel mechanism of substrate recognition, and control of product formation, by Bmi1/Ring1b.
Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex.,Bentley ML, Corn JE, Dong KC, Phung Q, Cheung TK, Cochran AG EMBO J. 2011 Jul 19. doi: 10.1038/emboj.2011.243. PMID:21772249[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Bentley ML, Corn JE, Dong KC, Phung Q, Cheung TK, Cochran AG. Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex. EMBO J. 2011 Jul 19. doi: 10.1038/emboj.2011.243. PMID:21772249 doi:10.1038/emboj.2011.243
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