User:Wayne Decatur/Structure analysis tools

From Proteopedia

proteopedia linkproteopedia link

• Superpose from the University of Alberta -a protein superposition server.
• PrePPI: database of predicted and experimentally determined protein-protein interactions (PPIs) for yeast and human.
• XtalPred - Prediction of Protein Crystallizability (program described by (this paper by Mizianty et al. entitled "Covering complete proteomes with X-ray structures: a current snapshot."^[1], supposed to be better but I couldn't find a link to a webserver running it. Or anything of it online yet.)

Contents 1 RNA 2 Related 3 References 4 See Also

RNA

• DSSR -(Dissecting the Spatial Structure of RNA), an integrated and automated tool for analyzing and annotating RNA tertiary structures. PMID: 26184874 (Maybe name of given supplemental data file previously DSSR stood for "DSSR_ a software program for Defining the Secondary Structures of RNA from three-dimensional coordinates".? Jmol now has integrated real time updates to data generated by DSSR, see here
• RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs PMID: 24771339.

Related

References

See Also

• Modeling
• Molecular modeling and visualization software
• User:Wayne Decatur/Code for Molecular Structure and Visualization Work