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spinqualitylabelsall models Escherichia coli reca protein-bound DNA (PDB entry 3h90) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

is an integral membrane protein of the E. coli bacteria that regulates the import and export of Zn²⁺. This regulation prevents zinc toxicity and deprivation within the cytoplasm, which can lead to cell death.

Contents 1 Structure 2 Salt Bridge 3 Electrostatic Interactions 4 Conformation Changes

Structure

Yiip's complete protein structure is identified as a dimer. Each monomer structure is classified into two different domains, the Trans-Membrane Domain (TMD) and C-terminus Domain (CTD). The TMD consists of six helices, forming binding site A, four of which are oriented in a parallel manner, with respect to each other, while the remaining two are aligned anti parallel to this four helix cluster. A "" or "charge interlock" consisting of four amino acid residues, two Lysines (Lys 77) and two Aspartates (Asp 207), forms a junction that both monomers of Yiip converge at, forming a pivot point for conformation changes. A large portion of the protein containing binding site C, approximately 30 Å in length^[1], protrudes into the cytoplasm functioning as a zinc sensor within the cell.

Salt Bridge

Electrostatic Interactions

along the exterior surface of the protein is primarily neutral for the TMDs, but transitions to positive near the location of the charge interlock and interior side of the cell membrane. This positive section is characteristic of trans-membrane proteins as a means of achieving proper orientation within the cell membrane. Binding sites A, B, and C, as well as the CTDs of both monomers, all possess a high negative charge relative to the other charges present, facilitating the binding and releasing of Zn²⁺ ions. The two CTDs are held together by the charge interlock and hydrophobic interactions of the TMDs despite their electrostatic repulsion. Upon the release of Zn²⁺ ions, the CTDs undergo electronegativity alterations, which enables domain separation.

Conformation Changes