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Tubulin 3D Structures

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Revision as of 07:52, 8 June 2022 by Michal Harel (Talk | contribs)
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3D Structures of Tubulin

Updated on 08-June-2022 - For a general description of the protein see Tubulin {{#tree:id=OrganizedByTopic|openlevels=0|

  • α-tubulin
    • 2e4h – hTUBA C terminal + restin CAP-Gly domain 2 – human
    • 6j4v - hTUBA1B + small vasohibin-binding protein + tubulinyl-Tyr carboxypeptidase
    • 2bto – PdTUBA+thioredoxin 1 – Prosthecobacter dejongeii
  • α-tubulin + β-tubulin
    • 5n5n – hTUBA-1A+hTUB-3 + GTP + GMPCPP – Cryo EM
    • 6e7b – hTUBA-1B+hTUB-3 + GTP + GMPCPP – Cryo EM
    • 7sja – hTUBA-1B+hTUB-3 + GTP – Cryo EM
    • 7sj9 – hTUBA-1B+hTUB-3 + microtubule-associated protein + GTP – Cryo EM
    • 5ij0, 7sj7, 7sj8 – hTUBA-1B+hTUB-3 + GTP + GDP – Cryo EM
    • 5ij9 – hTUBA-1B+hTUB-3 (mutant) + GTP + GDP – Cryo EM
    • [5n5n]] – hTUBA-1B+hTUB-5 + GTP + GMPCPP – Cryo EM
    • [6e7c]] – hTUBA-1B+hTUB-2B + GTP + GMPCPP – Cryo EM
    • 6i2i – hTUBA-1B +hTUB-5 + GTP + GMPCPP + stabilizer – Cryo EM
    • 7lxb, 7m18, 7m20 - hTUBA+hTUBB + GDP + GTP + drug – Cryo EM
    • 7pjf - hTUBA+hTUBB + darpin + GTP
    • 1jff - bTUBA+bTUBB - bovine
    • 6wvr, 6wvl, 6wvm - bTUBA+ bTUBB +GTP + GDP + stabilizer - Cryo EM
    • 3j6f - pTUBA+pTUBB – pig - Cryo EM
    • 3j6e, 7dmz - pTUBA+pTUBB +GMPCPP – Cryo EM
    • 3j7i - pTUBA+pTUBB +GTP – Cryo EM
    • 7sgs - pTUBA+pTUBB + esconsin + GTP – Cryo EM
    • 6o2r, 6o2q, 6o2s, 6o2t, 5xxw, 5xxv, 5xxt, 6evx, 6evz, 6ew0, 6dpv - pTUBA+pTUBB +GTP + GDP – Cryo EM
    • 6evy, 6dpw - pTUBA+pTUBB + GTPgS + GTP – Cryo EM
    • 5xxx, 7dn0 - pTUBA+pTUBB +GTP + GMPCPP – Cryo EM
    • 6dpu, 6evw - pTUBA+pTUBB + GMPCPP + GTP – Cryo EM
    • 1tub - pTUBA+pTUBB – electron diffraction
    • 5w3f, 5w3j - yTUBA+ yTUBB +GTP + GDP – yeast - Cryo EM
    • 5w3h - yTUBA+ yTUBB +GTP + GDP + stabilizer - Cryo EM
    • 2btq – PdTUBA+PdTUBB
    • 6e88 - TUBA+ TUBB +GTP + GDP – Caenorhabditis elegans - Cryo EM
    • 6ve7, 6u42 – TUBA + TUBB + GTP + GDP + stabilizer – Chlamydomonas reinhardtii - Cryo EM
    • 6u0h, 5ubq, 5ucy - TtTUBA+TUBB + GTP + GDP – Tetrahymena thermophila - Cryo EM
    • 7miz - TUBA+TUBB + SPM1 + PDI + GTP + GDP – Toxoplasma gondii - Cryo EM
  • α-tubulin + β-tubulin complexes with stathmin
    • 5lp6 – bTUBA1B +bTUBB2B +stathmin-4 + protein
    • 3du7, 3e22, 1z2b, 1sa0, 1sa1, 1ffx – bTUBA1C+bTUBB2B+stathmin-4
    • 5la6 - bTUBA+bTUBB+stathmin-4 + protein + GDP + GTP + ATP derivative + benzodioxol derivative
    • 7jfr - bTUBA+bTUBB+stathmin-4 + protein + GDP + GTP + ATP derivative + auristatin
    • 6xes, 6xet, 7lz7, 7lz8 – pTUBA1B +pTUBB +stathmin-4 + inhibitor
    • 3hkb, 3hkc, 3hkd, 3hke, 3n2g, 3n2k, 3ryc, 3ryf, 3ryh, 3ryi, 4eb6 – sTUBA+sTUBB+stathmin-4 – sheep
    • 4f61 - sTUBA+sTUBB+stathmin-like protein R4
    • 3ut5 - sTUBA+sTUBB+stathmin-4 + vinca peptide
    • 4eb6 - sTUBA+sTUBB+stathmin-4

4f6r - sTUBA+sTUBB+stathmin-like protein R1 + ankyrin repeat protein

    • 6tde - sTUBA+sTUBB+stathmin-4 + GDP + GTP
    • 6h9b - sTUBA+sTUBB+stathmin-4 + GDP + GTP + quinoline derivative
  • α-tubulin + β-tubulin complexes with stathmin and tubulin Tyr-ligase
    • 4o2a, 4iij, 4i55 - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase
    • 4wbn, 6s9e, 6gze, 6i5c - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative
    • 5xlz - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + anthracene derivative
    • 6qqn, 6knz - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + pyrimidine derivative
    • 6hx8, 6gj4, 6y6d – bTUBA1B+bTUBB2B+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + quinoline derivative
    • 6ses, 7au5, 7ogn – bTUBA1B+bTUBB2B+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + drug
    • 6k9v, 6jcj, 6fkl, 6fkj, 6f7c, 5z4p, 5yz3, 5nfz, 5lyj, 6y4m, 6y4n, 7cbz, 7cpd, 7cpq, 7e4p, 7e4q, 7e4r, 7e4y, 7e4z – bTUBA + bTUBB + stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + inhibitor
    • 5ng1 – bTUBA + bTUBB + stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + inhibitor + stabilizer
    • 6fjf, 4tv8 - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + maytansine
    • 4tuy, 4o4h, 4o4i, 4o4j, 4o4l, 4i50, 4i4t, 
6fii, 6fjm, 6gf3, 6qtn, 5jh7, 5bmv, 5la6, 5osk, 5jvd, 5gon, 5xlt, 5xaf, 5xag – bTUBA + bTUBB +stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + drug
    • 5iyz, 5j2t, 5j2u, 4tv9, 4yj2, 4yj3, 2xrp, 7jfr – bTUBAB1 +bTUBBB2 +stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + auristatin anti-mitotics
    • 4o2b - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + colchicine
    • 4ihj - bTUBA+bTUBB+stathmin-4 + tubulin Tyr-ligase + ADP
    • 7en3 - bTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + toxin
    • 4x1i, 4x1k, 4x1y, 4x20 - sTUBA+bTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + dolastatin + colchicine
    • 5eyp - sTUBA+sTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + colchicine
    • 4zhq, 4zi7, 4zol – pTUBAB1 +pTUBBB2 +stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + valinamide derivative
    • 6o5n - pTUBA+pTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + i
    • 6x1e, 6x1e, 6x1f, 7cld, 7cnm, 7cnn, 7dad, 7dae, 7daf, 7dp8, 7emj - pTUBA+pTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + drug
    • 7cno, 7l05 - pTUBA+pTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + toxin
    • 5jqg, 5xp3 - pTUBA+pTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative
    • 6o61, 6o5m - pTUBA+pTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + imidazole derivative
    • 6nng, 6eg5 - pTUBA+ pTUBB+stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + pyrimidine derivative
    • 6n47 - pTUBA+ pTUBB+stathmin-4 + protein + GDP + GTP + ATP derivative + pyrimidine derivative
    • 5jcb, 5ca0, 5yl2, 5ylj, 5yls - pTUBA+ pTUBB+stathmin-4 + protein + GDP + GTP + ATP derivative + depolymerizer
    • 5cb4, 5xhc, 5xi5, 5xi7, 7cda, 7ce6, 7ce8, 7cek, 7db9, 7dba. 7dbb, 7dbc. 7dbd, 7exc – pTUBA + pTUBB + stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + inhibitor
    • 6kpp – pTUBA1B + pTUBB + stathmin-4 + TUB-Tyr ligase + GDP + GTP + benzofuran derivative
    • 5xiw – pTUBA + pTUBB +stathmin-4 + TUB-Tyr ligase + GDP + GTP + anti-gout agent
    • 6pc4, 5xkg, 5xkh, 5xke, 5xkf – pTUBA + pTUBB +stathmin-4 + TUB-Tyr ligase + GDP + GTP + anti-tumor agent
    • 5c8y, 6d88, 6br1, 6brf, 6bry, 6bs2, 5yl4 – pTUBA + pTUBB +stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + anti-tumor agent
    • 5ezy - pTUBA+ bTUBB+stathmin-4 + protein + GDP + GTP + ATP derivative + stabilizer
    • 5zxh - pTUBA+ bTUBB (mutant) +stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + imidazole derivative
    • 5z4u, 6agk, 5h7o, 5h74 – pTUBA + bTUBB + stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + inhibitor
    • 5fnv – cTUBA + rTUBB +stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + anti-tumor agent - chicken
    • 5ca1 – pTUBA + cTUBB + stathmin-4 + TUB-Tyr ligase + GDP + GTP + ATP derivative + inhibitor
  • α-tubulin + β-tubulin complex with kinesin
    • 2p4n - hTUBA+hTUBB+kinesin heavy chain
    • 6ojq – hTUBA1B+hTUBB2B+kinesin -1 heavy chain + GTP + GMPCPP – Cryo EM
    • 2wbe – bTUBA1D+bTUBB2B+kinesin+AMPPNP
    • 3dco - bTUBA+bTUBB+kinesin-like NOD
    • [4ck5]], 4ck6, 4ck7 - bTUBA+bTUBB+kinesin-like KIF11 motor domain
    • 5hnw, 5hnx, 5hny, 5hnz – bTUBAB1 +bTUBBB2 +kinesin-14 + GDP + GTP + stabilizer
    • [[3edl}} - bTUBA1D+bTUBB2B+kinesin motor domain
    • 4hna - bTUBA+bTUBB + kinesin heavy chain + ankyrin repeat protein
    • 4uxo, 4uxp, 4uxr, 4uxs, 4uxy - bTUBA+bTUBB + kinesin motor domain + GDP + GTP + stabilizer – Cryo EM
    • 4uxt, 4uy0 - bTUBA+bTUBB + kinesin heavy chain + GDP + GTP + stabilizer – Cryo EM
    • 3j2u - bTUBA+bTUBB+kinesin-like KLP10A head domain
    • 4aqv, 4aqw - bTUBA+bTUBB+kinesin-like KIF11 – Cryo EM
    • 4atx - bTUBA1D+bTUBB2B+kinesin motor domain – Cryo EM
    • 6zpi - bTUBA1D+bTUBB2B+kinesin motor domain Kif15 – Cryo EM
    • 5mm7 - bTUBA1A+bTUBB +kinesin-4 motor domain + GTP + GDP + ANP + stabilizer – Cryo EM
    • 5mm4 - bTUBA1A+bTUBB +kinesin-5 motor domain + GTP + GDP + ANP + stabilizer – Cryo EM
    • 5ogc, 5oam - bTUBA+pTUBB+kinesin-like KIF18A + GTP + GDP + stabilizer – Cryo EM
    • 5ocu - bTUBA+pTUBB+kinesin-like KIF18A + GTP + GDP + ANP + stabilizer – Cryo EM
    • 2hxf - pTUBA+pTUBB+kinesin-like KIF1A+AMPPNP
    • 6bbn - pTUBA+pTUBB+kinesin-like KIF2A + darpin + ANP + GDP + GTP
    • 3j6h - pTUBA+pTUBB +GMPCPP + kinesin heavy chain – Cryo EM
    • 3j8x - pTUBA+pTUBB +GDP + GTP + kinesin heavy chain – Cryo EM
    • 3j8y - pTUBA+pTUBB +GDP + GTP + ATP + kinesin heavy chain – Cryo EM
    • 2hxh - pTUBA+pTUBB+kinesin-like KIF1A+ADP
    • 1ia0 - pTUBA+pTUBB+kinesin-like KIF1A+ATP
    • 6tiw - pTUBA+pTUBB+kinesin-like KIF11 + GMPCPP + quinoline derivative – Cryo EM
    • 6ta4 - pTUBA+pTUBB+kinesin-like KIF11 + GTP + GMPCPP + ANP – Cryo EM
    • 6ta3 - pTUBA+pTUBB+kinesin-like KIF11 + GTP + GMPCPP + quinolin derivative – Cryo EM
    • 6b0i, 6b0i, 6b0c - pTUBA+pTUBB+kinesin-like KLP10A + GTP + GDP + stabilizer – Cryo EM
    • 6vpp - pTUBA+pTUBB+kinesin-like KLP61F + GTP + GDP – Cryo EM
    • 6vpo - pTUBA+pTUBB+kinesin-like KLP61F + GTP + GDP + ANP – Cryo EM
    • 7nb8 - pTUBA+pTUBB+kinesin-5 motor domain + GTP + G2P – Cryo EM
    • 7nba - pTUBA+pTUBB+kinesin-5 motor domain + GTP + G2P + ANP – Cryo EM
    • 6mlr - pTUBA+pTUBB+kinesin-like KIF7 + GTP + GDP + ANP + stabilizer – Cryo EM
    • 6mlq - pTUBA+pTUBB+kinesin-like KIF7 + GTP + GDP + ADP + stabilizer – Cryo EM
    • 7lvr - pTUBA+pTUBB+kinesin-like KIF14 + GTP + GDP + ADP – Cryo EM
    • 6wwe, 6wwf, 6wwg, 6wwh, 6wwi, 6wwj, 6wwk, 6wwl, 6wwm, 6wwn, 6wwo, 6wvp, 6wwq, 6wwr, 6wws, 6wwu, 6wwv, 7lvq - pTUBA+pTUBB+kinesin-like KIF14 + GTP + GDP + ANP – Cryo EM
    • 6s8m - pTUBA+pTUBB+kinesin-like CUT7 + GTP + GDP + ANP – Cryo EM
    • 4lnu - sTUBA+sTUBB + ankyrin repeat protein + GDP + GTP + kinesin heavy chain
    • 5mlv - fyTUBA+ fyTUBB+kinesin-like CUT7 + GTP + GDP + ANP – fission yeast - Cryo EM


  • α-tubulin + β-tubulin other complexes
    • 6s8l, 6s8k - hTUBA+hTUBB + ankyrin repeat protein + GDP + GTP + plinabulin
    • 6rza - hTUBA+hTUBB +GTP + GDP + stabilizer + dynein heavy chain – Cryo EM
    • 6qvj, 6qus - hTUBA+hTUBB +GTP + GDP + stabilizer + CAMSAP1 – Cryo EM
    • 6qve - hTUBA+hTUBB + GTP + GDP + stabilizer + protein – Cryo EM
    • 6quy - hTUBA+hTUBB +GTP + GDP + stabilizer + CKK – Cryo EM
    • 6wsl - hTUBA1A+hTUBB3 + small vasohibin-binding protein + tubulinyl-Tyr carboxypeptidase + GMPCPP + GTP – Cryo EM
    • 7nvnl – hTUB2A in TRIC coplex + nanobody – Cryo EM
    • 6zwb, 6zwc, 7z01, 7z02 - bTUBA+bTUBB + darpin + photoswitch + GTP + GDP
    • 7alr, 7odn - bTUBA+bTUBB + darpin + drug + GTP + GDP
    • 7z7d - bTUBA+bTUBB+GDP+GTP+ drug
    • 1tvk - bTUBA+bTUBB+GDP+GTP+ drug – electron crystallography
    • 3iz0 - bTUBA+bTUBB+hNDC80/SPC25+hNUF2/SPC24 – electron microscopy
    • 3j1t, 3j1u - bTUBA+bTUBB+ dynein
    • 4atu - bTUBA1D+bTUBB2B+doublecortin – Cryo EM
    • 6rev, 6rf2, 6rf8, 6rfd - bTUBA1B+bTUBB2B + doublecortin + GDP + GTP – Cryo EM
    • 5itz - bTUBA+bTUBB + CENP-J + darpin + GTP + GDP + colchicine
    • 5eib - bTUBA+bTUBB + CENP-J peptide + darpin + GTP + GDP
    • 7ac5 - bTUBA+ bTUBB + stathmin-like domain R1 + darpin + GDP + GTP
    • 6kiq, 6kio – pTUBA1A+pTUBB + dynein heavy chain – Cryo EM
    • 3j6p, 6rzb - pTUBA+pTUBB +GTP + GDP + stabilizer + dynein heavy chain – Cryo EM
    • 3j6g - pTUBA+pTUBB +GTP + GDP + stabilizer – Cryo EM
    • 5kmg - pTUBA+pTUBB + protein regulator + GTP + GDP – Cryo EM
    • 6cvj, [[6cvn], 7pqc, 7pqp – pTUBA1B+pTUBB + tau + GTP + GDP – Cryo EM 
**6mzg, 6mzf, 6mze - pTUBA+pTUBB + STU2P + darpin + GTP + GDP
    • 5syg, 5syf, 5sye, 5syc - pTUBA+pTUBB + STU2P + stabilizer + GTP + GDP
    • 6gx7 - sTUBA+sTUBB + alpharep + low calcium response + GTP
    • 6gwd, 6gwc - sTUBA+sTUBB + alpharep + GTP + GDP
    • 7q1e, 7q1f, 7z0f, 7z0g - sTUBA+sTUBB + alpharep + CENP-J + GTP + GDP
    • 6bjc, 6gvn - sTUBA+sTUBB + darpin + GTP
    • 6gvm - sTUBA+sTUBB + stathmin-like domain R1 + darpin + GDP + GTP
    • 4drx - sTUBA+sTUBB + ankyrin repeat protein
    • 4ffb, 4u3j - yTUBA+TUBB (mutant) + protein STU2
    • 5mjs - fyTUBA+ fyTUBB + MAL3 + GTP + GDP + ANP - Cryo EM
    • 6u0u, 6u0t - TtTUBA+TUBB+ profilament ribbon protein + GTP + GDP - Cryo EM
    • 7mwg - TtTUBA+TUBB + GTP + GDP - Cryo EM
    • 7pje - TtTUBA+TtTUBB + darpin + GTP
    • 7n32 - TtTUBA+TtTUBB + dynein + GTP + GDP – Cryo EM

γ-tubulin

3cb2 – hTUBG1+GDP 1z5v - hTUBG1+GTPgS 1z5w - hTUBG1+GTP

    • 6v6b – hTUBG2 + TUBG3 – Cryo EM
    • 6x0v – hTUBG2 + mitotic-spindle organizing protein + Cep215 – Cryo EM

3rip – hTUBG4

    • 6v69 – hTUBG4 + TUBG5 – Cryo EM
    • 6x0u – hTUBG3 + TUBG6 + mitotic spindle organizing protein – Cryo EM
    • 6l81 – hTUBG5 + mitotic-spindle organizing protein
    • 6v6c – hTUBG6 – Cryo EM
    • 6v6s – hTUBG + ADP + GDP – Cryo EM
    • 6tf9 – TUBG – frog - Cryo EM
    • 7m2w, 7m2x, 7m2y, 7m2z – yTUBG + SPC97 + SPC98 - Cryo EM
    • 6l80 – fyTUBG subunit Mod21 + mitotic-spindle organizing protein
    • 7anz – TUBG – Candida albicans - Cryo EM

}}

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Michal Harel, Joel L. Sussman

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