Tyrosine phosphatase 3D structures

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3D Structures of tyrosine phosphatase

Updated on 15-February-2024 - For a general description of the protein see Tyrosine phosphatase {{#tree:id=OrganizedByTopic|openlevels=0|

  • Class I
  • Non-receptor type tyrosine phosphatase; Domains – catalytic 1-321;
  • Non-receptor type PTP complex with peptide

3zmp, 3zmq, 4zrt – hPTPN1 catalytic domain + peptide

    • 4qum, 4rh5, 4rh9, 4rhg, 4s0g – hPTPN3 catalytic domain (mutant) 628-909 + peptide
    • 6hks, 6t36, 8cqy, 8oep – hPTPN3 PDZ domain 489-597 + peptide
    • 3nfk, 3nfl, 5eyz, 5ez0 - hPTPN4 PDZ domain + peptide
    • 7vze - hPTPN4 PDZ domain + papillomavirus peptide
    • 3d42, 3d44 – hPTPN7 catalytic domain (mutant) + peptide
    • 4icz, 6kzq, 6l03 – hPTPN9 catalytic domain + peptide
    • 5o2p – hPTPN12 SH3 domain/peptide
    • 3lny, 7xty - hPTPN13 PDZ2 domain 1362-1456 + peptide
    • 4gfu, 4gfv - hPTPN18 residues 6-300 + peptide
    • 4nnd - hPTPN18 residues 6-300 (mutant) + ERBB-2
    • 3brh, 3olr - hPTPN22 catalytic domain + peptide
    • 3omh - hPTPN22 catalytic domain (mutant) + peptide
    • 5crv, 5mk3, 5mk2, 5mk1, 5mk0, 5mjy – hRPTP23 domain Bro + peptide
    • 5lm1 – hRPTP23 residues 362-713 + UBAP-1 peptide
    • 3rz2 - rPTP 4A1 + peptide
    • 1aya, 1ayb, 1ayc, 1ayd – mPTP Syp N terminal SH2 domain + peptide
    • 1vj6 – mPTP-BL PDZ2 domain + APC C terminal – NMR
    • 6gbe – mPTPN13 PDZ3 domain + PRK2 peptide – NMR
    • 5xw5 – yPTPN CDC14 + SWI6 peptide
    • 6g86 – yPTPN CDC14 + SIC1 peptide
    • 6g85, 6g84 – yPTPN CDC14 + CBK1 peptide
    • 2dxp, 2i6o – SsPTP (mutant) + peptide
  • Non-receptor type PTP complex with small molecule
  • Non-receptor type PTP complex with protein
    • 2b4s - hPTP-b catalytic domain + insulin receptor
    • 2gph - hPTPN7 catalytic domain (mutant) + MAPK2
    • 6iwd – hPTPN14 886-1187 + HPV18 CR3 domain
    • 5k25, 5k24, 5k23 – hPTP PRL-2 + CNNM3
    • 5k22 – hPTP PRL-2 (mutant) + CNNM3
    • 5tsr – hPTP PRL-3 (mutant) + CNNM3
    • 6nmv, 6nmu, 6nmt, 6nms, 6nmr, 6bit - hPTP SHPS-1 + antibody
    • 5lxq – mPTP PRL-1 + CNNM2
    • 6wus – mPTP PRL-1 (mutant) + CNNM2
    • 5mmz – mPTP 4A1 + CNNM2
    • 4pbv, 4pbw – cPTP CRYP-alpha1 29-316 + TrkC
    • 4zj7 – yPTPN CDC14 C terminal + importin
    • 1g4u – StPTP + RAS-related C3 botulinum toxin substrate
    • 1jyo – StPTP + secretion chaperone SICP
  • Non-receptor type PTP SHP-1 or tyrosine-protein phosphatase non-receptor type 6
    • 3ps5 – hPTP SHP-1 (mutant)
    • 1gwz, 2b3o, 4hjp – hPTP SHP-1 catalytic domain 242-528
    • 4gry, 4grz, 4hjq – hPTP SHP-1 catalytic domain (mutant)
    • 1x6c - hPTP SHP-1 C-terminal SH2 domain 105-220 – NMR
    • 2dju, 2edy – hPTP SHP-1 FN #3 domain 309-401 NMR
    • 2dn7 – hPTP SHP-1 FN3 #6 domain 811-904 - NMR
    • 1fpr, 4gs0 - hPTP SHP-1 catalytic domain + peptide
    • 2rmx, 2yu7 – hPTP SHP-1 C-terminal SH2 domain + peptide – NMR
    • 6sm5 - hPTP SHP-1 C-terminal SH2 domain + monobody
  • Non-receptor type PTP SHP-2 or tyrosine-protein phosphatase non-receptor type 11
  • Yersinia PTP Yop
    • 1yts, 4yaa, 4z6b, 4zi4, 4zn5, 6xft - YePTP catalytic domain (mutant) – Yersinia enterocolitica
    • 7l0i – YePTP (mutant)
    • 1xxp, 1xxv - YePTP catalytic domain (mutant) + peptide
    • 2i42, 7l0m – YePTP (mutant) + VO4
    • 1ypt, 1ytw – YePTP catalytic domain + WO4
    • 1ytn - YePTP catalytic domain + NO3
    • 1lyv - YePTP catalytic domain (mutant) + phosphate
    • 1pa9, 3bm8 - YePTP catalytic domain (mutant) + inhibitor
    • 3u96 - YePTP catalytic domain (mutant) + PNCS
    • 1huf – YpPTP - Yersinia pestis
    • 1qz0 - YpPTP catalytic domain + peptide
    • 2y2f - YpPTP catalytic domain + inhibitor
    • 1k46 - YpPTP N terminal domain
    • 1m0v - YpPTP N terminal domain + peptide – NMR
    • 4gf3 – YpPTP + Yop targeting protein
  • Receptor-type PTP
    • 1yfo, 2i1y – mRPTP-α catalytic domain
    • 1p15 - mRPTP-α D2 domain
    • 3pxh - mRPTP Ig domains
    • 1jln, 2a8b - mRPTP-R catalytic domain
    • 3sr9 - mRPTP-σ residues 1326 – 1901
    • 2nv5 – rRPRP
    • 2yd4 - cRPTP-σ Ig1-2 domain – chicken
    • 2yd1, 2yd2, 3pxj – DmRPTP Ig1-2 domain – Drosophila melanogaster
    • 3s3e – DmRPTP-10D catalytic domain
    • 6x38 – DmRPTP FN5 domain
  • Human receptor-type PTP
    • 6uzt - hRPTP-α catalytic domain
    • 2ahs – hRPTP-β
    • 2i3r, 2i5x - hRPTP-β catalytic domain
    • 2hc1, 2hc2 - hRPTP-β catalytic domain (mutant)
    • 2h4v, 2pbn, 3qcb – hRPTP-γ domain 1
    • 3qcn - hRPTP-γ domain 1 (mutant)
    • 2nlk - hRPTP-γ catalytic domain
    • 3jxh - hRPTP-γ CA-like domain
    • 5fmv - hRPTP-γ domain D1-D4
    • 5fn6 - hRPTP-γ domain D1-D3
    • 5fn7 - hRPTP-γ domain D1-D2
    • 5fn8 - rRPTP-γ domain D3-D4
    • 4yfe - hRPTP-δ FN1-FN2 domain 321-511
    • 4yfg - hRPTP-δ Ig1-FN1 domain 21-501
    • 2dlh, 1x5z - hRPTP-δ FN3 domain 405-514 – NMR
    • 2yd6, 2yd7 - hRPTP-δ Ig1-2 domain 21-220
    • 6x3a - hRPTP-δ FN4-FN6 domain 607-916
    • 2jjd - hRPTP-ε residues 107-697
    • 6d4d - hRPTP-ε domain D1 residues 22-313
    • 6d4f, 6d3f - hRPTP-ε domain D2 residues 425-700
    • 8a1f - hRPTP-kappa N-terminal residues 28-385
    • 2c7s - hRPTP-kappa residues 865-1154
    • 1rpm - hRPTP-μ catalytic domain
    • 2c9a - hRPTP-μ MAM-IG module
    • 2v5y - hRPTP-μ extracellular region
    • 8a16, 8a17 - hRPTP- FN#3-4 domain 478-723
    • 2g59, 2gjt - hRPTP- catalytic domain
    • 7u08 - hRPTP-eta residues 37-374
    • 7u01 - hRPTP-eta residues 206-364
    • 2cfv – hRPTP-eta residues 1019-1311
    • 2nz6 - hRPTP-eta residues 1019-1311 (mutant)
    • 2dle - hRPTP-eta FN3 domain – NMR
    • 2qep – hRPTP-ν2 D1 domain
    • 4hti, 4htj – hRPTP-ν2 membrane proximal ectodomain
    • 2ooq – hRPTP-ρ
    • 2fh7, 4bpc - hRPTP-σ catalytic domain (mutant)
    • 2yd9 - hRPTP-σ Ig1-3 domain (mutant)
    • 2yd3, 2yd5 - hRPTP-σ Ig1-2 domain
    • 4pbx - hRPTP-σ residues 30-588
    • 3jxf - hRPTP-ζ CA-like domain
    • 5awx - hRPTP-ζ D1 domain
    • 2qt7, 3n01, 3n4w, 3ng8, 3np5 – hRPTP IA-2
    • 6tpv - hRPTP-F 1st-2nd FN3 domain 319-512
    • 6tpu, 6tpt - hRPTP-F 3rd-4th FN3 domain 513-705
    • 4n5u - hRPTP-F 4th FN3 domain 601-705
    • 2edx - hRPTP-F 4th FN3 domain – NMR
    • 6tpw - hRPTP-F 1st-4th FN3 domain
    • 6j6u - rRPTP-ζ D1-D2 domain
    • 3jxg, 3jxh - mRPTP-γ CA-like domain
    • 7xc0 - hRPTP-H 797-1086
  • Receptor-type PTP complexes
    • 2h02, 2h04, 2i3u, 2i4e, 2i4g, 2i4h - hRPTP-β catalytic domain + inhibitor
    • 2h03 - hRPTP-β catalytic domain (mutant) + inhibitor
    • 2hy3, 3qcc, 3qcd - hRPTP-γ domain 1 + VO4
    • 3qce, 3qcf, 3qcg, 3qch, 3qci, 3qcj, 3qck - hRPTP-γ domain 1 + inhibitor
    • 3qcl, 3qcm - hRPTP-γ domain 1 (mutant) + inhibitor
    • 5e5r - hRPTP-γ domain CA + contactin 3
    • 4rca, 4y61 - hRPTP-δ Ig1-Ig2 domain 21-318 + SLITRK1
    • 5xnp - hRPTP-δ Ig1-Ig2 domain (mutant) + SALM5
    • 6kip - hRPTP-δ residues 1617-1912 + liprin
    • 5y32, 4yfd, 4yh7, 5wy8 - hRPTP-δ Ig1-Ig2 domain + IL1RAPL1
    • 5xnp - hRPTP-d Ig1-Ig2 domain (mutant) + SALM5
    • 6kip - hRPTP-d residues 1617-1912 + liprin
    • 2yd8 - hRPTP-σ Ig1-2 domain + sucrose octasulfate
    • 3s97 - hRPTP-zeta CA-like domain 34-302 + congtactin Ig domains
    • 8fn8, 8fn9 – hPTP zeta FN domain 310-411 + tenascin fg domain
    • 5h08 – hPTP zeta D1 domain 1698-1993 + inhibitor
    • 6kr4 - hRPTP-F residues 1332-1907 + liprin
    • 1ygr – hRPTP CD45 cytoplasmic domain (mutant) + T-cell receptor peptide
    • 5e5u - mRPTP-γ domain CA + contactin 6
    • 3kld - mRPTP-γ CA-like domain + contactin 4
    • 5xwu - mRPTP- Ig1-Ig3 domain + LRR-IG
    • 5xwt - mRPTP- Ig1-FN1 domain + LRR-IG
    • 3s3f - DmRPTP-10D catalytic domain + VO4
    • 3s3h - DmRPTP-10D catalytic domain + peptide
    • 3s3k - DmRPTP-10D catalytic domain + inhibitor


  • Class II – Low molecular weight PTP (LMW-PTP)
    • 1xww, 4z99, 5jnr, 5jns, 5jnt – hLMW-PTP
    • 6y2v, 6y2w – hLMW-PTP (mutant)
    • 1phr – bLMW-PTP
    • 5jnv – bLMW-PTP (mutant)
    • 5jnu – mLMW-PTP
    • 7cuy – DmLMW-PTP
    • 1p8a – LMW-PTP (mutant) – Tritrichomonas foetus – NMR
    • 2cwd – LMW-PTP – Thermus thermophilus
    • 5got – LMW-PTP – Streptococcus pyogenes
    • 1u2p, 2luo – MtLMW-PTP – Mycobacterium tuberculosis
    • 2fek, 2wja – LMW-PTP Wzb – Escherichia coli
    • 4eti, 4etm, 4kk3 – BsLMW-PTP
    • 4etn, 4kk4 – BsLMW-PTP (mutant)
    • 7dhd – VvLMW-PTP Wzb – Vibrio vulnificus
    • 4egs – LMW-PTP N-terminal 1-146 – Thermoanaerobacter tengcongensis
    • 2gi4 – LMW-PTP – Campylobacter jejuni
  • LMW-PTP complex
    • 3n8i, 5kqg, 5kql, 5kqm, 5kqp, 7kh8, 7uw6 – hLMW-PTP + inhibitor
    • 4z9a – hLMW-PTP + phenylmethanesulfonic acid
    • 4z9b – hLMW-PTP + benzylphosphonic acid
    • 1z12 - bLMW-PTP + VO4
    • 1z13 - bPTP + MoO4
    • 5jnw – bLMW-PTP + inhibitor
    • 3rof – LMW-PTP-A + peptide – Staphylococcus aureus
    • 1u2q – MtLMW-PTP + glycerol
    • 2oz5 – MtLMW-PTP + inhibitor
    • 7dhe, 7dhf – VvLMW-PTP Wzb + inhibitor
  • Class III – CDC25 or M-phase inducer phosphatase 2
    • 1c25 – hCDC25A catalytic domain (mutant)
    • 1qb0, 1cwr, 1ym9, 1ymd, 1ymk, 1yml, 1ys0, 2uzq - hCDC25B catalytic domain
    • 2a2k, 2ifd, 2ifv - hCDC25B catalytic domain (mutant)
    • 4wh7 - hCDC25B catalytic domain (mutant) + ligand
    • 4wh9 - hCDC25B catalytic domain (mutant) + inhibitor
    • 1cwr, 1cws - hCDC25B catalytic domain + WO4
    • 1cwt - hCDC25B catalytic domain + Methyl-Hg
    • 3op3 – hCDC25C residues 270-462
  • Class IV
    • 4tvv – PTP – Legionella pneumophila
  • T-cell tyrosine phosphatase
  • Other tyrosine phosphatases
    • 4az1 – PTP – Trypanosoma cruzi
    • 4r0s – PaPTP – Pseudomonas aeruginosa
    • 4r0t – PaPTP (mutant) + tyrosine
    • 5ncr – PTP (mutant) – ORF virus

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