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User:Michael Strong/H1N1/PB1

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< User:Michael Strong | H1N1

Revision as of 18:51, 18 May 2009 by Michael Strong (Talk | contribs)

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home • H1N1 • PB2• PB1• PA • HA • NP • NA • MP • NS

1 Structure
2 Sequence Polymorphisms
3 Multiple Sequence Alignment
4 BLAST

Structure

Sequence Polymorphisms

Protein	Polymorphism	Strain with Polymorphism	Number of Strains with Polymorphism
PB1	L10V	229396439_A/New_York/10/200	1
PB1	I12T	229536040_A/Arizona/02/2009	1
PB1	Q48R	229783391_A/New_York/1669/2	1
PB1	A157V	229487525_A/Canada-NS/RV153	2
PB1	A370G	237624323_A/swine/Alberta/O	1
PB1	F466S	237624323_A/swine/Alberta/O	1
PB1	V587A	229487525_A/Canada-NS/RV153	3
PB1	N641S	229892784_A/Canada-NS/RV153	1
PB1	M646V	237624323_A/swine/Alberta/O	1
PB1	S665F	237624323_A/swine/Alberta/O	1
PB1	S678N	229396395_A/New_York/18/200	1

Multiple Sequence Alignment

H1N1 Swine Flu Multiple Sequence Alignment of PB1 Protein, 39 sequences

gi|227977138_A/Texas/04/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|237511919_A/Mexico/4486/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|227977130_A/Texas/05/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229299523_A/Texas/04/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|227977150_A/California/07/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|227831817_A/California/07/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|227831787_A/California/06/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|227831772_A/California/05/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|227809826_A/California/04/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229396425_A/California/08/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229396483_A/New_York/19/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229484071_A/Mexico/InDRE448      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229484073_A/Canada-ON/RV152      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229535801_A/Texas/09/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229535973_A/Texas/08/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229536068_A/Texas/07/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229535788_A/New_York/22/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229536137_A/New_York/09/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229536079_A/Indiana/09/2009      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229535820_A/California/14/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229598889_A/Texas/15/2009        MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229783412_A/New_York/1682/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229892786_A/Mexico/InDRE411      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229892790_A/Canada-ON/RV152      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229892788_A/Canada-ON/RV152      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229892792_A/Canada-AB/RV153      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|237511921_A/Mexico/4604/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|237511927_A/Mexico/4603/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|237511925_A/Mexico/4482/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|237511923_A/Mexico/4108/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229487525_A/Canada-NS/RV153      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229892794_A/Canada-NS/RV153      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229892784_A/Canada-NS/RV153      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229783391_A/New_York/1669/2      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHRYS 50
gi|229536040_A/Arizona/02/2009      MDVNPTLLFLKTPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229536026_A/Minnesota/02/20      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229396439_A/New_York/10/200      MDVNPTLLFVKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|229396395_A/New_York/18/200      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
gi|237624323_A/swine/Alberta/O      MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS 50
                                    *********:* ***********************************:**

gi|227977138_A/Texas/04/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|237511919_A/Mexico/4486/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|227977130_A/Texas/05/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229299523_A/Texas/04/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|227977150_A/California/07/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|227831817_A/California/07/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|227831787_A/California/06/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|227831772_A/California/05/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|227809826_A/California/04/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229396425_A/California/08/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229396483_A/New_York/19/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229484071_A/Mexico/InDRE448      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229484073_A/Canada-ON/RV152      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229535801_A/Texas/09/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229535973_A/Texas/08/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229536068_A/Texas/07/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229535788_A/New_York/22/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229536137_A/New_York/09/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229536079_A/Indiana/09/2009      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229535820_A/California/14/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229598889_A/Texas/15/2009        EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229783412_A/New_York/1682/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229892786_A/Mexico/InDRE411      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229892790_A/Canada-ON/RV152      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229892788_A/Canada-ON/RV152      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229892792_A/Canada-AB/RV153      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|237511921_A/Mexico/4604/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|237511927_A/Mexico/4603/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|237511925_A/Mexico/4482/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|237511923_A/Mexico/4108/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229487525_A/Canada-NS/RV153      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229892794_A/Canada-NS/RV153      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229892784_A/Canada-NS/RV153      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229783391_A/New_York/1669/2      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229536040_A/Arizona/02/2009      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229536026_A/Minnesota/02/20      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229396439_A/New_York/10/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|229396395_A/New_York/18/200      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
gi|237624323_A/swine/Alberta/O      EKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHP 100
                                    **************************************************

gi|227977138_A/Texas/04/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|237511919_A/Mexico/4486/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|227977130_A/Texas/05/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229299523_A/Texas/04/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|227977150_A/California/07/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|227831817_A/California/07/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|227831787_A/California/06/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|227831772_A/California/05/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|227809826_A/California/04/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229396425_A/California/08/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229396483_A/New_York/19/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229484071_A/Mexico/InDRE448      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229484073_A/Canada-ON/RV152      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229535801_A/Texas/09/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229535973_A/Texas/08/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229536068_A/Texas/07/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229535788_A/New_York/22/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229536137_A/New_York/09/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229536079_A/Indiana/09/2009      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229535820_A/California/14/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229598889_A/Texas/15/2009        GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229783412_A/New_York/1682/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229892786_A/Mexico/InDRE411      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229892790_A/Canada-ON/RV152      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229892788_A/Canada-ON/RV152      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229892792_A/Canada-AB/RV153      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|237511921_A/Mexico/4604/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|237511927_A/Mexico/4603/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|237511925_A/Mexico/4482/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|237511923_A/Mexico/4108/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229487525_A/Canada-NS/RV153      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229892794_A/Canada-NS/RV153      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229892784_A/Canada-NS/RV153      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229783391_A/New_York/1669/2      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229536040_A/Arizona/02/2009      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229536026_A/Minnesota/02/20      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229396439_A/New_York/10/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|229396395_A/New_York/18/200      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
gi|237624323_A/swine/Alberta/O      GIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF 150
                                    **************************************************

gi|227977138_A/Texas/04/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|237511919_A/Mexico/4486/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|227977130_A/Texas/05/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229299523_A/Texas/04/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|227977150_A/California/07/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|227831817_A/California/07/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|227831787_A/California/06/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|227831772_A/California/05/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|227809826_A/California/04/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229396425_A/California/08/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229396483_A/New_York/19/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229484071_A/Mexico/InDRE448      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229484073_A/Canada-ON/RV152      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229535801_A/Texas/09/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229535973_A/Texas/08/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229536068_A/Texas/07/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229535788_A/New_York/22/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229536137_A/New_York/09/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229536079_A/Indiana/09/2009      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229535820_A/California/14/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229598889_A/Texas/15/2009        RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229783412_A/New_York/1682/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229892786_A/Mexico/InDRE411      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229892790_A/Canada-ON/RV152      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229892788_A/Canada-ON/RV152      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229892792_A/Canada-AB/RV153      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|237511921_A/Mexico/4604/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|237511927_A/Mexico/4603/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|237511925_A/Mexico/4482/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|237511923_A/Mexico/4108/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229487525_A/Canada-NS/RV153      RSNGLTVNESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229892794_A/Canada-NS/RV153      RSNGLTVNESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229892784_A/Canada-NS/RV153      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229783391_A/New_York/1669/2      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229536040_A/Arizona/02/2009      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229536026_A/Minnesota/02/20      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229396439_A/New_York/10/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|229396395_A/New_York/18/200      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
gi|237624323_A/swine/Alberta/O      RSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMV 200
                                    ******.*******************************************

gi|227977138_A/Texas/04/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|237511919_A/Mexico/4486/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|227977130_A/Texas/05/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229299523_A/Texas/04/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|227977150_A/California/07/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|227831817_A/California/07/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|227831787_A/California/06/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|227831772_A/California/05/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|227809826_A/California/04/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229396425_A/California/08/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229396483_A/New_York/19/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229484071_A/Mexico/InDRE448      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229484073_A/Canada-ON/RV152      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229535801_A/Texas/09/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229535973_A/Texas/08/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229536068_A/Texas/07/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229535788_A/New_York/22/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229536137_A/New_York/09/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229536079_A/Indiana/09/2009      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229535820_A/California/14/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229598889_A/Texas/15/2009        TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229783412_A/New_York/1682/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229892786_A/Mexico/InDRE411      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229892790_A/Canada-ON/RV152      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229892788_A/Canada-ON/RV152      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229892792_A/Canada-AB/RV153      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|237511921_A/Mexico/4604/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|237511927_A/Mexico/4603/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|237511925_A/Mexico/4482/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|237511923_A/Mexico/4108/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229487525_A/Canada-NS/RV153      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229892794_A/Canada-NS/RV153      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229892784_A/Canada-NS/RV153      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229783391_A/New_York/1669/2      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229536040_A/Arizona/02/2009      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229536026_A/Minnesota/02/20      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229396439_A/New_York/10/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|229396395_A/New_York/18/200      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
gi|237624323_A/swine/Alberta/O      TQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRG 250
                                    **************************************************

gi|227977138_A/Texas/04/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|237511919_A/Mexico/4486/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|227977130_A/Texas/05/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229299523_A/Texas/04/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|227977150_A/California/07/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|227831817_A/California/07/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|227831787_A/California/06/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|227831772_A/California/05/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|227809826_A/California/04/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229396425_A/California/08/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229396483_A/New_York/19/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229484071_A/Mexico/InDRE448      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229484073_A/Canada-ON/RV152      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229535801_A/Texas/09/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229535973_A/Texas/08/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229536068_A/Texas/07/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229535788_A/New_York/22/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229536137_A/New_York/09/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229536079_A/Indiana/09/2009      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229535820_A/California/14/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229598889_A/Texas/15/2009        FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229783412_A/New_York/1682/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229892786_A/Mexico/InDRE411      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229892790_A/Canada-ON/RV152      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229892788_A/Canada-ON/RV152      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229892792_A/Canada-AB/RV153      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|237511921_A/Mexico/4604/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|237511927_A/Mexico/4603/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|237511925_A/Mexico/4482/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|237511923_A/Mexico/4108/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229487525_A/Canada-NS/RV153      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229892794_A/Canada-NS/RV153      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229892784_A/Canada-NS/RV153      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229783391_A/New_York/1669/2      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229536040_A/Arizona/02/2009      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229536026_A/Minnesota/02/20      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229396439_A/New_York/10/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|229396395_A/New_York/18/200      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
gi|237624323_A/swine/Alberta/O      FVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF 300
                                    **************************************************

gi|227977138_A/Texas/04/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|237511919_A/Mexico/4486/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|227977130_A/Texas/05/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229299523_A/Texas/04/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|227977150_A/California/07/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|227831817_A/California/07/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|227831787_A/California/06/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|227831772_A/California/05/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|227809826_A/California/04/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229396425_A/California/08/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229396483_A/New_York/19/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229484071_A/Mexico/InDRE448      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229484073_A/Canada-ON/RV152      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229535801_A/Texas/09/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229535973_A/Texas/08/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229536068_A/Texas/07/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229535788_A/New_York/22/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229536137_A/New_York/09/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229536079_A/Indiana/09/2009      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229535820_A/California/14/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229598889_A/Texas/15/2009        TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229783412_A/New_York/1682/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229892786_A/Mexico/InDRE411      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229892790_A/Canada-ON/RV152      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229892788_A/Canada-ON/RV152      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229892792_A/Canada-AB/RV153      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|237511921_A/Mexico/4604/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|237511927_A/Mexico/4603/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|237511925_A/Mexico/4482/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|237511923_A/Mexico/4108/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229487525_A/Canada-NS/RV153      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229892794_A/Canada-NS/RV153      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229892784_A/Canada-NS/RV153      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229783391_A/New_York/1669/2      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229536040_A/Arizona/02/2009      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229536026_A/Minnesota/02/20      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229396439_A/New_York/10/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|229396395_A/New_York/18/200      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
gi|237624323_A/swine/Alberta/O      TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMAR 350
                                    **************************************************

gi|227977138_A/Texas/04/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|237511919_A/Mexico/4486/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|227977130_A/Texas/05/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229299523_A/Texas/04/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|227977150_A/California/07/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|227831817_A/California/07/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|227831787_A/California/06/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|227831772_A/California/05/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|227809826_A/California/04/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229396425_A/California/08/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229396483_A/New_York/19/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229484071_A/Mexico/InDRE448      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229484073_A/Canada-ON/RV152      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229535801_A/Texas/09/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229535973_A/Texas/08/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229536068_A/Texas/07/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229535788_A/New_York/22/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229536137_A/New_York/09/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229536079_A/Indiana/09/2009      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229535820_A/California/14/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229598889_A/Texas/15/2009        LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229783412_A/New_York/1682/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229892786_A/Mexico/InDRE411      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229892790_A/Canada-ON/RV152      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229892788_A/Canada-ON/RV152      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229892792_A/Canada-AB/RV153      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|237511921_A/Mexico/4604/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|237511927_A/Mexico/4603/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|237511925_A/Mexico/4482/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|237511923_A/Mexico/4108/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229487525_A/Canada-NS/RV153      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229892794_A/Canada-NS/RV153      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229892784_A/Canada-NS/RV153      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229783391_A/New_York/1669/2      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229536040_A/Arizona/02/2009      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229536026_A/Minnesota/02/20      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIXPLLIDGT 400
gi|229396439_A/New_York/10/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|229396395_A/New_York/18/200      LGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
gi|237624323_A/swine/Alberta/O      LGKGYMFESKRMKIRTQIPGEMLASIDLKYFNESTKKKIEKIRPLLIDGT 400
                                    *******************.********************** *******

gi|227977138_A/Texas/04/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|237511919_A/Mexico/4486/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|227977130_A/Texas/05/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229299523_A/Texas/04/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|227977150_A/California/07/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|227831817_A/California/07/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|227831787_A/California/06/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|227831772_A/California/05/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|227809826_A/California/04/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229396425_A/California/08/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229396483_A/New_York/19/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229484071_A/Mexico/InDRE448      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229484073_A/Canada-ON/RV152      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229535801_A/Texas/09/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229535973_A/Texas/08/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229536068_A/Texas/07/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229535788_A/New_York/22/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229536137_A/New_York/09/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229536079_A/Indiana/09/2009      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229535820_A/California/14/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229598889_A/Texas/15/2009        ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229783412_A/New_York/1682/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229892786_A/Mexico/InDRE411      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229892790_A/Canada-ON/RV152      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229892788_A/Canada-ON/RV152      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229892792_A/Canada-AB/RV153      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|237511921_A/Mexico/4604/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|237511927_A/Mexico/4603/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|237511925_A/Mexico/4482/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|237511923_A/Mexico/4108/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229487525_A/Canada-NS/RV153      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229892794_A/Canada-NS/RV153      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229892784_A/Canada-NS/RV153      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229783391_A/New_York/1669/2      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229536040_A/Arizona/02/2009      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229536026_A/Minnesota/02/20      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229396439_A/New_York/10/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|229396395_A/New_York/18/200      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
gi|237624323_A/swine/Alberta/O      ASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI 450
                                    **************************************************

gi|227977138_A/Texas/04/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|237511919_A/Mexico/4486/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|227977130_A/Texas/05/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229299523_A/Texas/04/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|227977150_A/California/07/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|227831817_A/California/07/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|227831787_A/California/06/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|227831772_A/California/05/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|227809826_A/California/04/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229396425_A/California/08/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229396483_A/New_York/19/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229484071_A/Mexico/InDRE448      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229484073_A/Canada-ON/RV152      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229535801_A/Texas/09/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229535973_A/Texas/08/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229536068_A/Texas/07/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229535788_A/New_York/22/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229536137_A/New_York/09/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229536079_A/Indiana/09/2009      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229535820_A/California/14/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229598889_A/Texas/15/2009        VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229783412_A/New_York/1682/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229892786_A/Mexico/InDRE411      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229892790_A/Canada-ON/RV152      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229892788_A/Canada-ON/RV152      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229892792_A/Canada-AB/RV153      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|237511921_A/Mexico/4604/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|237511927_A/Mexico/4603/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|237511925_A/Mexico/4482/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|237511923_A/Mexico/4108/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229487525_A/Canada-NS/RV153      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229892794_A/Canada-NS/RV153      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229892784_A/Canada-NS/RV153      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229783391_A/New_York/1669/2      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229536040_A/Arizona/02/2009      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229536026_A/Minnesota/02/20      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229396439_A/New_York/10/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|229396395_A/New_York/18/200      VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
gi|237624323_A/swine/Alberta/O      VNAPNHEGIQAGVDRSYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYG 500
                                    *************** **********************************

gi|227977138_A/Texas/04/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|237511919_A/Mexico/4486/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|227977130_A/Texas/05/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229299523_A/Texas/04/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|227977150_A/California/07/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|227831817_A/California/07/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|227831787_A/California/06/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|227831772_A/California/05/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|227809826_A/California/04/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229396425_A/California/08/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229396483_A/New_York/19/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229484071_A/Mexico/InDRE448      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229484073_A/Canada-ON/RV152      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229535801_A/Texas/09/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229535973_A/Texas/08/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229536068_A/Texas/07/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229535788_A/New_York/22/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229536137_A/New_York/09/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229536079_A/Indiana/09/2009      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229535820_A/California/14/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229598889_A/Texas/15/2009        FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229783412_A/New_York/1682/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229892786_A/Mexico/InDRE411      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229892790_A/Canada-ON/RV152      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229892788_A/Canada-ON/RV152      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229892792_A/Canada-AB/RV153      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|237511921_A/Mexico/4604/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|237511927_A/Mexico/4603/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|237511925_A/Mexico/4482/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|237511923_A/Mexico/4108/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229487525_A/Canada-NS/RV153      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229892794_A/Canada-NS/RV153      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229892784_A/Canada-NS/RV153      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229783391_A/New_York/1669/2      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229536040_A/Arizona/02/2009      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229536026_A/Minnesota/02/20      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229396439_A/New_York/10/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|229396395_A/New_York/18/200      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
gi|237624323_A/swine/Alberta/O      FVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQL 550
                                    **************************************************

gi|227977138_A/Texas/04/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|237511919_A/Mexico/4486/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|227977130_A/Texas/05/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229299523_A/Texas/04/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|227977150_A/California/07/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|227831817_A/California/07/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|227831787_A/California/06/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|227831772_A/California/05/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|227809826_A/California/04/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229396425_A/California/08/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229396483_A/New_York/19/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229484071_A/Mexico/InDRE448      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229484073_A/Canada-ON/RV152      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229535801_A/Texas/09/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229535973_A/Texas/08/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229536068_A/Texas/07/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229535788_A/New_York/22/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229536137_A/New_York/09/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229536079_A/Indiana/09/2009      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229535820_A/California/14/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229598889_A/Texas/15/2009        FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229783412_A/New_York/1682/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229892786_A/Mexico/InDRE411      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229892790_A/Canada-ON/RV152      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229892788_A/Canada-ON/RV152      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229892792_A/Canada-AB/RV153      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|237511921_A/Mexico/4604/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|237511927_A/Mexico/4603/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|237511925_A/Mexico/4482/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|237511923_A/Mexico/4108/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229487525_A/Canada-NS/RV153      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN 600
gi|229892794_A/Canada-NS/RV153      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN 600
gi|229892784_A/Canada-NS/RV153      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN 600
gi|229783391_A/New_York/1669/2      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229536040_A/Arizona/02/2009      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229536026_A/Minnesota/02/20      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229396439_A/New_York/10/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|229396395_A/New_York/18/200      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
gi|237624323_A/swine/Alberta/O      FIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN 600
                                    ************************************.*************

gi|227977138_A/Texas/04/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|237511919_A/Mexico/4486/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|227977130_A/Texas/05/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229299523_A/Texas/04/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|227977150_A/California/07/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|227831817_A/California/07/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|227831787_A/California/06/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|227831772_A/California/05/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|227809826_A/California/04/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229396425_A/California/08/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229396483_A/New_York/19/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229484071_A/Mexico/InDRE448      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229484073_A/Canada-ON/RV152      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229535801_A/Texas/09/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229535973_A/Texas/08/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229536068_A/Texas/07/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229535788_A/New_York/22/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229536137_A/New_York/09/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229536079_A/Indiana/09/2009      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229535820_A/California/14/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229598889_A/Texas/15/2009        IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229783412_A/New_York/1682/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229892786_A/Mexico/InDRE411      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229892790_A/Canada-ON/RV152      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229892788_A/Canada-ON/RV152      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229892792_A/Canada-AB/RV153      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|237511921_A/Mexico/4604/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|237511927_A/Mexico/4603/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|237511925_A/Mexico/4482/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|237511923_A/Mexico/4108/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229487525_A/Canada-NS/RV153      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229892794_A/Canada-NS/RV153      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229892784_A/Canada-NS/RV153      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVSNAVVMPAHG 650
gi|229783391_A/New_York/1669/2      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229536040_A/Arizona/02/2009      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229536026_A/Minnesota/02/20      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229396439_A/New_York/10/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|229396395_A/New_York/18/200      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHG 650
gi|237624323_A/swine/Alberta/O      IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVVPAHG 650
                                    ****************************************.****:****

gi|227977138_A/Texas/04/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|237511919_A/Mexico/4486/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|227977130_A/Texas/05/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229299523_A/Texas/04/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|227977150_A/California/07/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|227831817_A/California/07/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|227831787_A/California/06/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|227831772_A/California/05/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|227809826_A/California/04/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229396425_A/California/08/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229396483_A/New_York/19/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229484071_A/Mexico/InDRE448      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229484073_A/Canada-ON/RV152      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229535801_A/Texas/09/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229535973_A/Texas/08/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229536068_A/Texas/07/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229535788_A/New_York/22/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229536137_A/New_York/09/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229536079_A/Indiana/09/2009      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229535820_A/California/14/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229598889_A/Texas/15/2009        PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229783412_A/New_York/1682/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229892786_A/Mexico/InDRE411      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229892790_A/Canada-ON/RV152      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229892788_A/Canada-ON/RV152      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229892792_A/Canada-AB/RV153      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|237511921_A/Mexico/4604/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|237511927_A/Mexico/4603/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|237511925_A/Mexico/4482/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|237511923_A/Mexico/4108/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229487525_A/Canada-NS/RV153      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229892794_A/Canada-NS/RV153      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229892784_A/Canada-NS/RV153      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229783391_A/New_York/1669/2      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229536040_A/Arizona/02/2009      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229536026_A/Minnesota/02/20      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229396439_A/New_York/10/200      PAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
gi|229396395_A/New_York/18/200      PAKSMEYDAVATTHSWIPKRNRSILNTNQRGILEDEQMYQKCCNLFEKFF 700
gi|237624323_A/swine/Alberta/O      PAKSMEYDAVATTHFWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFF 700
                                    ************** ************.**********************

gi|227977138_A/Texas/04/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|237511919_A/Mexico/4486/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|227977130_A/Texas/05/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229299523_A/Texas/04/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|227977150_A/California/07/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|227831817_A/California/07/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|227831787_A/California/06/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|227831772_A/California/05/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|227809826_A/California/04/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229396425_A/California/08/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229396483_A/New_York/19/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229484071_A/Mexico/InDRE448      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229484073_A/Canada-ON/RV152      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229535801_A/Texas/09/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229535973_A/Texas/08/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229536068_A/Texas/07/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229535788_A/New_York/22/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229536137_A/New_York/09/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229536079_A/Indiana/09/2009      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229535820_A/California/14/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229598889_A/Texas/15/2009        PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229783412_A/New_York/1682/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229892786_A/Mexico/InDRE411      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229892790_A/Canada-ON/RV152      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229892788_A/Canada-ON/RV152      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229892792_A/Canada-AB/RV153      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|237511921_A/Mexico/4604/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|237511927_A/Mexico/4603/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|237511925_A/Mexico/4482/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|237511923_A/Mexico/4108/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229487525_A/Canada-NS/RV153      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229892794_A/Canada-NS/RV153      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229892784_A/Canada-NS/RV153      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229783391_A/New_York/1669/2      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229536040_A/Arizona/02/2009      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229536026_A/Minnesota/02/20      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229396439_A/New_York/10/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|229396395_A/New_York/18/200      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
gi|237624323_A/swine/Alberta/O      PSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTI 750
                                    **************************************************

gi|227977138_A/Texas/04/2009        EELRRQK 757
gi|237511919_A/Mexico/4486/200      -------
gi|227977130_A/Texas/05/2009        EELRRQK 757
gi|229299523_A/Texas/04/2009        EELRRQK 757
gi|227977150_A/California/07/2      EELRRQK 757
gi|227831817_A/California/07/2      EELRRQK 757
gi|227831787_A/California/06/2      EELRRQK 757
gi|227831772_A/California/05/2      EELRRQK 757
gi|227809826_A/California/04/2      EELRRQK 757
gi|229396425_A/California/08/2      EELRRQK 757
gi|229396483_A/New_York/19/200      EELRRQK 757
gi|229484071_A/Mexico/InDRE448      EELRRQK 757
gi|229484073_A/Canada-ON/RV152      EELRRQK 757
gi|229535801_A/Texas/09/2009        EELRRQK 757
gi|229535973_A/Texas/08/2009        EELRRQK 757
gi|229536068_A/Texas/07/2009        EELRRQK 757
gi|229535788_A/New_York/22/200      EELRRQK 757
gi|229536137_A/New_York/09/200      EELRRQK 757
gi|229536079_A/Indiana/09/2009      EELRRQK 757
gi|229535820_A/California/14/2      EELRRQK 757
gi|229598889_A/Texas/15/2009        EELRRQK 757
gi|229783412_A/New_York/1682/2      EELRRQK 757
gi|229892786_A/Mexico/InDRE411      EELRRQK 757
gi|229892790_A/Canada-ON/RV152      EELRRQK 757
gi|229892788_A/Canada-ON/RV152      EELRRQK 757
gi|229892792_A/Canada-AB/RV153      EELRRQK 757
gi|237511921_A/Mexico/4604/200      EELRRQK 757
gi|237511927_A/Mexico/4603/200      EELRRQK 757
gi|237511925_A/Mexico/4482/200      EELRRQK 757
gi|237511923_A/Mexico/4108/200      EELRRQK 757
gi|229487525_A/Canada-NS/RV153      EELRRQK 757
gi|229892794_A/Canada-NS/RV153      EELRRQK 757
gi|229892784_A/Canada-NS/RV153      EELRRQK 757
gi|229783391_A/New_York/1669/2      EELRRQK 757
gi|229536040_A/Arizona/02/2009      EELRRQK 757
gi|229536026_A/Minnesota/02/20      EELRRQK 757
gi|229396439_A/New_York/10/200      EELRRQK 757
gi|229396395_A/New_York/18/200      EELRRQK 757
gi|237624323_A/swine/Alberta/O      EELRRQK 757

BLAST


>gb|AAO88267.1|AF342823_1  PB1 [Influenza A virus (A/Wisconsin/10/98 (H1N1))]
Length=757

 Score = 1575 bits (4077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 745/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAL87925.1|AF455727_1  polymerase subunit [Influenza A virus (A/Swine/Iowa/930/01(H1N2))]
Length=757

 Score = 1573 bits (4073),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR++FESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIEFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABA46964.1|  PB1 [Influenza A virus (A/swine/Minnesota/00395/2004(H3N1))]
Length=757

 Score = 1573 bits (4072),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDE+MYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDERMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABP49379.1|  polymerase PB1 [Influenza A virus (A/South Australia/11/2000(H3N2))]
Length=757

 Score = 1572 bits (4071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG48024.1|  polymerase PB1 [Influenza A virus (A/New York/727/1994(H3N2))]
 gb|ABG88473.1|  polymerase PB1 [Influenza A virus (A/New York/736/1994(H3N2))]
Length=757

 Score = 1572 bits (4071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG37282.1|  polymerase PB1 [Influenza A virus (A/New York/665/1994(H3N2))]
 gb|ABG79982.1|  polymerase PB1 [Influenza A virus (A/New York/661/1994(H3N2))]
 gb|ABK40664.1|  polymerase PB1 [Influenza A virus (A/New York/681/1995(H3N2))]
Length=757

 Score = 1572 bits (4071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSVAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAF76001.1|AF250130_1  polymerase subunit PB1 [influenza A virus (A/Swine/Indiana/9K035/99 
(H1N2))]
Length=757

 Score = 1572 bits (4071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKG+WTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGRWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR++KRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVDKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQ+KYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQRKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG47969.1|  polymerase PB1 [Influenza A virus (A/New York/716/1994(H3N2))]
 gb|ABG88462.1|  polymerase PB1 [Influenza A virus (A/New York/735/1994(H3N2))]
Length=757

 Score = 1572 bits (4070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 744/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG26898.1|  polymerase PB1 [Influenza A virus (A/New York/698/1995(H3N2))]
 gb|ABG26909.1|  polymerase PB1 [Influenza A virus (A/New York/702/1995(H3N2))]
 gb|ABG37172.1|  polymerase PB1 [Influenza A virus (A/New York/632/1996(H3N2))]
 13 more sequence titles
 gb|ABG37249.1|  polymerase PB1 [Influenza A virus (A/New York/658/1995(H3N2))]
 gb|ABG37260.1|  polymerase PB1 [Influenza A virus (A/New York/659/1994(H3N2))]
 gb|ABG37293.1|  polymerase PB1 [Influenza A virus (A/New York/669/1995(H3N2))]
 gb|ABG37315.1|  polymerase PB1 [Influenza A virus (A/New York/672/1995(H3N2))]
 gb|ABG37337.1|  polymerase PB1 [Influenza A virus (A/New York/679/1995(H3N2))]
 gb|ABG47881.1|  polymerase PB1 [Influenza A virus (A/New York/684/1995(H3N2))]
 gb|ABG47914.1|  polymerase PB1 [Influenza A virus (A/New York/689/1995(H3N2))]
 gb|ABG67176.1|  polymerase PB1 [Influenza A virus (A/New York/670/1995(H3N2))]
 gb|ABG80015.1|  polymerase PB1 [Influenza A virus (A/New York/666/1995(H3N2))]
 gb|ABG80059.1|  polymerase PB1 [Influenza A virus (A/New York/691/1995(H3N2))]
 gb|ABG88363.1|  polymerase PB1 [Influenza A virus (A/New York/673/1995(H3N2))]
 gb|ABG88374.1|  polymerase PB1 [Influenza A virus (A/New York/683/1995(H3N2))]
 gb|ABG88396.1|  polymerase PB1 [Influenza A virus (A/New York/690/1995(H3N2))]
Length=757

 Score = 1572 bits (4070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABI20911.1|  polymerase PB1 [Influenza A virus (A/New York/688/1994(H3N2))]
Length=757

 Score = 1571 bits (4069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIG+TVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGITVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG79993.1|  polymerase PB1 [Influenza A virus (A/New York/663/1994(H3N2))]
Length=757

 Score = 1571 bits (4069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPE+CLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEICLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB80237.1|  polymerase PB1 [Influenza A virus (A/New York/521/1998(H3N2))]
Length=757

 Score = 1571 bits (4069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSVAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACE78124.1|  polymerase PB1 [Influenza A virus (A/swine/Korea/CY10/2007(H3N2))]
Length=757

 Score = 1571 bits (4068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAE+LASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEVLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALI+NAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIINAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACD65218.1|  polymerase PB1 [Influenza A virus (A/swine/Ohio/75004/04(H1N1))]
Length=757

 Score = 1571 bits (4068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRMNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            +MK+RTQIPAEMLASIDLKYFNE T+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  KMKLRTQIPAEMLASIDLKYFNEPTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMP+HGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPSHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80114.1|  polymerase PB1 [Influenza A virus (A/New York/713/1994(H3N2))]
Length=757

 Score = 1571 bits (4068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLF+KDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFVKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG67187.1|  polymerase PB1 [Influenza A virus (A/New York/675/1995(H3N2))]
Length=757

 Score = 1571 bits (4068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSVAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISS+VEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSLVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAC63409.1|  PB1 polymerase subunit [Influenza A virus H3N2]
 gb|AAC63411.1|  PB1 polymerase subunit [Influenza A virus H3N2]
 gb|AAC63412.1|  PB1 polymerase subunit [Influenza A virus H3N2]
 217 more sequence titles
 gb|AAC63453.1|  PB1 polymerase subunit [Influenza A virus H3N2]
 gb|AAY46424.1|  polymerase PB1 [Influenza A virus (A/New York/240/1998(H3N2))]
 gb|AAY46434.1|  polymerase PB1 [Influenza A virus (A/New York/249/1998(H3N2))]
 gb|AAY64290.1|  polymerase PB1 [Influenza A virus (A/New York/262/1999(H3N2))]
 gb|AAY64330.1|  polymerase PB1 [Influenza A virus (A/New York/256/1998(H3N2))]
 gb|AAY64380.1|  polymerase PB1 [Influenza A virus (A/New York/284/1999(H3N2))]
 gb|AAY64390.1|  polymerase PB1 [Influenza A virus (A/New York/286/1999(H3N2))]
 gb|AAY98045.1|  polymerase PB1 [Influenza A virus (A/New York/255/1999(H3N2))]
 gb|AAY98055.1|  polymerase PB1 [Influenza A virus (A/New York/257/1999(H3N2))]
 gb|AAY98095.1|  polymerase PB1 [Influenza A virus (A/New York/277/1999(H3N2))]
 gb|AAY98105.1|  polymerase PB1 [Influenza A virus (A/New York/279/1999(H3N2))]
 gb|AAY98135.1|  polymerase PB1 [Influenza A virus (A/New York/288/1999(H3N2))]
 gb|AAY98155.1|  polymerase PB1 [Influenza A virus (A/New York/290/1999(H3N2))]
 gb|AAY98165.1|  polymerase PB1 [Influenza A virus (A/New York/304/1998(H3N2))]
 gb|AAY98175.1|  polymerase PB1 [Influenza A virus (A/New York/311/1999(H3N2))]
 gb|AAY98205.1|  polymerase PB1 [Influenza A virus (A/New York/314/1999(H3N2))]
 gb|AAY98215.1|  polymerase PB1 [Influenza A virus (A/New York/317/1999(H3N2))]
 gb|AAY98245.1|  polymerase PB1 [Influenza A virus (A/New York/318/1999(H3N2))]
 gb|AAY98255.1|  polymerase PB1 [Influenza A virus (A/New York/321/1999(H3N2))]
 gb|AAY98337.1|  polymerase PB1 [Influenza A virus (A/New York/327/1999(H3N2))]
 gb|AAY98347.1|  polymerase PB1 [Influenza A virus (A/New York/329/1999(H3N2))]
 gb|AAY98364.1|  polymerase PB1 [Influenza A virus (A/New York/333/1999(H3N2))]
 gb|AAY98394.1|  polymerase PB1 [Influenza A virus (A/New York/337/1999(H3N2))]
 gb|AAY98414.1|  polymerase PB1 [Influenza A virus (A/New York/340/1999(H3N2))]
 gb|AAY98778.1|  polymerase PB1 [Influenza A virus (A/New York/248/1999(H3N2))]
 gb|AAZ38492.1|  polymerase PB1 [Influenza A virus (A/New York/331/1999(H3N2))]
 gb|AAZ38503.1|  polymerase PB1 [Influenza A virus (A/New York/332/1999(H3N2))]
 gb|AAZ38569.1|  polymerase PB1 [Influenza A virus (A/New York/260/1999(H3N2))]
 gb|AAZ74371.1|  polymerase PB1 [Influenza A virus (A/New York/283/1999(H3N2))]
 gb|AAZ74394.1|  polymerase PB1 [Influenza A virus (A/New York/254/1998(H3N2))]
 gb|AAZ74438.1|  polymerase PB1 [Influenza A virus (A/New York/285/1999(H3N2))]
 gb|AAZ74570.1|  polymerase PB1 [Influenza A virus (A/New York/347/1999(H3N2))]
 gb|AAZ74592.1|  polymerase PB1 [Influenza A virus (A/New York/398/1999(H3N2))]
 gb|AAZ79568.1|  polymerase PB1 [Influenza A virus (A/New York/325/1999(H3N2))]
 gb|AAZ79579.1|  polymerase PB1 [Influenza A virus (A/New York/328/1998(H3N2))]
 gb|AAZ79590.1|  polymerase PB1 [Influenza A virus (A/New York/330/1998(H3N2))]
 gb|AAZ83274.1|  polymerase PB1 [Influenza A virus (A/New York/252/1999(H3N2))]
 gb|AAZ83285.1|  polymerase PB1 [Influenza A virus (A/New York/261/1999(H3N2))]
 gb|AAZ83331.1|  polymerase PB1 [Influenza A virus (A/New York/339/1999(H3N2))]
 gb|ABB02966.1|  polymerase PB1 [Influenza A virus (A/New York/449/1999(H3N2))]
 gb|ABB02977.1|  polymerase PB1 [Influenza A virus (A/New York/450/1999(H3N2))]
 gb|ABB02988.1|  polymerase PB1 [Influenza A virus (A/New York/451/1999(H3N2))]
 gb|ABB02999.1|  polymerase PB1 [Influenza A virus (A/New York/453/1999(H3N2))]
 gb|ABB03010.1|  polymerase PB1 [Influenza A virus (A/New York/454/1999(H3N2))]
 gb|ABB03032.1|  polymerase PB1 [Influenza A virus (A/New York/457/1999(H3N2))]
 gb|ABB03054.1|  polymerase PB1 [Influenza A virus (A/New York/459/1999(H3N2))]
 gb|ABB04914.1|  polymerase PB1 [Influenza A virus (A/Hong Kong/14/92(H3N2))]
 gb|ABB04969.1|  polymerase PB1 [Influenza A virus (A/Nanchang/0074/94(H3N2))]
 gb|ABB46433.1|  polymerase PB1 [Influenza A virus (A/New York/455/1999(H3N2))]
 gb|ABB53704.1|  polymerase PB1 [Influenza A virus (A/New York/397/1999(H3N2))]
 gb|ABB60015.1|  polymerase PB1 [Influenza A virus (A/New York/517/1998(H3N2))]
 gb|ABB79818.1|  polymerase PB1 [Influenza A virus (A/Nanchang/A2/94(H3N2))]
 gb|ABB79976.1|  polymerase PB1 [Influenza A virus (A/Nanchang/58/93(H3N2))]
 gb|ABB80156.1|  polymerase PB1 [Influenza A virus (A/New York/501/1997(H3N2))]
 gb|ABB80226.1|  polymerase PB1 [Influenza A virus (A/New York/528/1998(H3N2))]
 gb|ABB80649.1|  polymerase PB1 [Influenza A virus (A/New York/532/1998(H3N2))]
 gb|ABB80669.1|  polymerase PB1 [Influenza A virus (A/New York/533/1998(H3N2))]
 gb|ABB80712.1|  polymerase PB1 [Influenza A virus (A/New York/545/1997(H3N2))]
 gb|ABC02307.1|  polymerase PB1 [Influenza A virus (A/New York/538/1998(H3N2))]
 gb|ABC54676.1|  polymerase PB1 [Influenza A virus (A/New York/326/1999(H3N2))]
 gb|ABC67880.1|  polymerase PB1 [Influenza A virus (A/Canterbury/42/2000(H3N2))]
 gb|ABC68230.1|  polymerase PB1 [Influenza A virus (A/Canterbury/39/2000(H3N2))]
 gb|ABC68241.1|  polymerase PB1 [Influenza A virus (A/Nanchang/A1/94(H3N2))]
 gb|ABC84568.1|  polymerase PB1 [Influenza A virus (A/Canterbury/88/2000(H3N2))]
 gb|ABC84579.1|  polymerase PB1 [Influenza A virus (A/Canterbury/99/2000(H3N2))]
 gb|ABC85762.1|  polymerase PB1 [Influenza A virus (A/Canterbury/73/2000(H3N2))]
 gb|ABC85784.1|  polymerase PB1 [Influenza A virus (A/Canterbury/38/2000(H3N2))]
 gb|ABC85795.1|  polymerase PB1 [Influenza A virus (A/Canterbury/17/2000(H3N2))]
 gb|ABD15589.1|  polymerase PB1 [Influenza A virus (A/New York/529/1998(H3N2))]
 gb|ABD15688.1|  polymerase PB1 [Influenza A virus (A/Canterbury/103/2000(H3N2))]
 gb|ABD15710.1|  polymerase PB1 [Influenza A virus (A/Canterbury/89/2000(H3N2))]
 gb|ABD15732.1|  polymerase PB1 [Influenza A virus (A/Canterbury/85/2000(H3N2))]
 gb|ABD15776.1|  polymerase PB1 [Influenza A virus (A/Canterbury/71/2000(H3N2))]
 gb|ABD15787.1|  polymerase PB1 [Influenza A virus (A/Canterbury/66/2000(H3N2))]
 gb|ABD15798.1|  polymerase PB1 [Influenza A virus (A/Canterbury/68/2000(H3N2))]
 gb|ABD16300.1|  polymerase PB1 [Influenza A virus (A/Canterbury/56/2000(H3N2))]
 gb|ABD60809.1|  polymerase PB1 [Influenza A virus (A/Nanchang/12/93(H3N2))]
 gb|ABD61323.1|  polymerase PB1 [Influenza A virus (A/Canterbury/87/2000(H3N2))]
 gb|ABD61389.1|  polymerase PB1 [Influenza A virus (A/Canterbury/64/2000(H3N2))]
 gb|ABD61400.1|  polymerase PB1 [Influenza A virus (A/Canterbury/67/2000(H3N2))]
 gb|ABD77628.1|  polymerase PB1 [Influenza A virus (A/West Coast/32/2001(H3N2))]
 gb|ABD77639.1|  polymerase PB1 [Influenza A virus (A/Canterbury/37/2001(H3N2))]
 gb|ABD77650.1|  polymerase PB1 [Influenza A virus (A/Canterbury/44/2001(H3N2))]
 gb|ABD77661.1|  polymerase PB1 [Influenza A virus (A/West Coast/55/2001(H3N2))]
 gb|ABD77760.1|  polymerase PB1 [Influenza A virus (A/West Coast/28/2001(H3N2))]
 gb|ABD77771.1|  polymerase PB1 [Influenza A virus (A/Canterbury/43/2001(H3N2))]
 gb|ABD77859.1|  polymerase PB1 [Influenza A virus (A/New York/580/1996(H3N2))]
 gb|ABD77881.1|  polymerase PB1 [Influenza A virus (A/New York/586/1996(H3N2))]
 gb|ABD77892.1|  polymerase PB1 [Influenza A virus (A/New York/588/1996(H3N2))]
 gb|ABD77903.1|  polymerase PB1 [Influenza A virus (A/New York/589/1996(H3N2))]
 gb|ABD77914.1|  polymerase PB1 [Influenza A virus (A/New York/597/1997(H3N2))]
 gb|ABD78134.1|  polymerase PB1 [Influenza A virus (A/New York/593/1996(H3N2))]
 gb|ABD94841.1|  polymerase PB1 [Influenza A virus (A/New York/562/1996(H3N2))]
 gb|ABD94863.1|  polymerase PB1 [Influenza A virus (A/New York/567/1996(H3N2))]
 gb|ABE13337.1|  polymerase PB1 [Influenza A virus (A/New York/578/1996(H3N2))]
 gb|ABE13563.1|  polymerase PB1 [Influenza A virus (A/New York/603/1996(H3N2))]
 gb|ABE13647.1|  polymerase PB1 [Influenza A virus (A/New York/611/1995(H3N2))]
 gb|ABE13682.1|  polymerase PB1 [Influenza A virus (A/New York/612/1995(H3N2))]
 gb|ABE13865.1|  polymerase PB1 [Influenza A virus (A/New York/613/1996(H3N2))]
 gb|ABE14027.1|  polymerase PB1 [Influenza A virus (A/New York/618/1995(H3N2))]
 gb|ABE14071.1|  polymerase PB1 [Influenza A virus (A/New York/628/1995(H3N2))]
 gb|ABF47624.1|  polymerase PB1 [Influenza A virus (A/New York/623/1995(H3N2))]
 gb|ABF47910.1|  polymerase PB1 [Influenza A virus (A/Wellington/9/2000(H3N2))]
 gb|ABF82714.1|  polymerase PB1 [Influenza A virus (A/New York/602/1996(H3N2))]
 gb|ABG26766.1|  polymerase PB1 [Influenza A virus (A/New York/557/1996(H3N2))]
 gb|ABG26931.1|  polymerase PB1 [Influenza A virus (A/New York/708/1994(H3N2))]
 gb|ABG37161.1|  polymerase PB1 [Influenza A virus (A/New York/624/1996(H3N2))]
 gb|ABG37183.1|  polymerase PB1 [Influenza A virus (A/New York/635/1996(H3N2))]
 gb|ABG37359.1|  polymerase PB1 [Influenza A virus (A/New York/751/1993(H3N2))]
 gb|ABG47925.1|  polymerase PB1 [Influenza A virus (A/New York/709/1994(H3N2))]
 gb|ABG47936.1|  polymerase PB1 [Influenza A virus (A/New York/711/1994(H3N2))]
 gb|ABG47947.1|  polymerase PB1 [Influenza A virus (A/New York/712/1993(H3N2))]
 gb|ABG47980.1|  polymerase PB1 [Influenza A virus (A/New York/719/1994(H3N2))]
 gb|ABG48002.1|  polymerase PB1 [Influenza A virus (A/New York/721/1994(H3N2))]
 gb|ABG48013.1|  polymerase PB1 [Influenza A virus (A/New York/726/1994(H3N2))]
 gb|ABG48035.1|  polymerase PB1 [Influenza A virus (A/New York/728/1994(H3N2))]
 gb|ABG48046.1|  polymerase PB1 [Influenza A virus (A/New York/752/1993(H3N2))]
 gb|ABG48068.1|  polymerase PB1 [Influenza A virus (A/Waikato/5/2000(H3N2))]
 gb|ABG48079.1|  polymerase PB1 [Influenza A virus (A/Waikato/1/2001(H3N2))]
 gb|ABG48310.1|  polymerase PB1 [Influenza A virus (A/New York/759/1993(H3N2))]
 gb|ABG48321.1|  polymerase PB1 [Influenza A virus (A/New York/760/1993(H3N2))]
 gb|ABG48343.1|  polymerase PB1 [Influenza A virus (A/New York/762/1993(H3N2))]
 gb|ABG48354.1|  polymerase PB1 [Influenza A virus (A/New York/763/1993(H3N2))]
 gb|ABG48376.1|  polymerase PB1 [Influenza A virus (A/New York/765/1993(H3N2))]
 gb|ABG67154.1|  polymerase PB1 [Influenza A virus (A/New York/598/1996(H3N2))]
 gb|ABG67220.1|  polymerase PB1 [Influenza A virus (A/New York/722/1994(H3N2))]
 gb|ABG67231.1|  polymerase PB1 [Influenza A virus (A/New York/729/1994(H3N2))]
 gb|ABG67242.1|  polymerase PB1 [Influenza A virus (A/New York/730/1994(H3N2))]
 gb|ABG67253.1|  polymerase PB1 [Influenza A virus (A/New York/734/1994(H3N2))]
 gb|ABG79971.1|  polymerase PB1 [Influenza A virus (A/New York/655/1994(H3N2))]
 gb|ABG80081.1|  polymerase PB1 [Influenza A virus (A/New York/705/1994(H3N2))]
 gb|ABG80125.1|  polymerase PB1 [Influenza A virus (A/New York/714/1994(H3N2))]
 gb|ABG80136.1|  polymerase PB1 [Influenza A virus (A/New York/746/1994(H3N2))]
 gb|ABG80147.1|  polymerase PB1 [Influenza A virus (A/New York/747/1994(H3N2))]
 gb|ABG80158.1|  polymerase PB1 [Influenza A virus (A/New York/748/1994(H3N2))]
 gb|ABG80213.1|  polymerase PB1 [Influenza A virus (A/Waikato/4/2000(H3N2))]
 gb|ABG80367.1|  polymerase PB1 [Influenza A virus (A/New York/770/1993(H3N2))]
 gb|ABG80378.1|  polymerase PB1 [Influenza A virus (A/New York/771/1993(H3N2))]
 gb|ABG80400.1|  polymerase PB1 [Influenza A virus (A/New York/777/1993(H3N2))]
 gb|ABG80422.1|  polymerase PB1 [Influenza A virus (A/New York/779/1993(H3N2))]
 gb|ABG80433.1|  polymerase PB1 [Influenza A virus (A/New York/786/1993(H3N2))]
 gb|ABG88297.1|  polymerase PB1 [Influenza A virus (A/New York/554/1996(H3N2))]
 gb|ABG88418.1|  polymerase PB1 [Influenza A virus (A/New York/718/1994(H3N2))]
 gb|ABG88429.1|  polymerase PB1 [Influenza A virus (A/New York/723/1994(H3N2))]
 gb|ABG88440.1|  polymerase PB1 [Influenza A virus (A/New York/724/1994(H3N2))]
 gb|ABG88451.1|  polymerase PB1 [Influenza A virus (A/New York/725/1994(H3N2))]
 gb|ABG88484.1|  polymerase PB1 [Influenza A virus (A/New York/738/1994(H3N2))]
 gb|ABG88495.1|  polymerase PB1 [Influenza A virus (A/New York/739/1994(H3N2))]
 gb|ABG88517.1|  polymerase PB1 [Influenza A virus (A/New York/741/1994(H3N2))]
 gb|ABG88528.1|  polymerase PB1 [Influenza A virus (A/New York/750/1994(H3N2))]
 gb|ABG88539.1|  polymerase PB1 [Influenza A virus (A/New York/753/1994(H3N2))]
 gb|ABG88594.1|  polymerase PB1 [Influenza A virus (A/Waikato/20/2000(H3N2))]
 gb|ABG88792.1|  polymerase PB1 [Influenza A virus (A/New York/785/1993(H3N2))]
 gb|ABI20922.1|  polymerase PB1 [Influenza A virus (A/New York/731/1994(H3N2))]
 gb|ABI20933.1|  polymerase PB1 [Influenza A virus (A/New York/742/1994(H3N2))]
 gb|ABI20966.1|  polymerase PB1 [Influenza A virus (A/New York/745/1994(H3N2))]
 gb|ABI20999.1|  polymerase PB1 [Influenza A virus (A/Waikato/17/2000(H3N2))]
 gb|ABI21296.1|  polymerase PB1 [Influenza A virus (A/New York/772/1993(H3N2))]
 gb|ABI21318.1|  polymerase PB1 [Influenza A virus (A/New York/774/1993(H3N2))]
 gb|ABI21329.1|  polymerase PB1 [Influenza A virus (A/New York/776/1993(H3N2))]
 gb|ABI21340.1|  polymerase PB1 [Influenza A virus (A/New York/780/1993(H3N2))]
 gb|ABI21351.1|  polymerase PB1 [Influenza A virus (A/New York/784/1993(H3N2))]
 gb|ABI21395.1|  polymerase PB1 [Influenza A virus (A/New York/790/1993(H3N2))]
 gb|ABI21417.1|  polymerase PB1 [Influenza A virus (A/New York/792/1993(H3N2))]
 gb|ABI21428.1|  polymerase PB1 [Influenza A virus (A/New York/794/1993(H3N2))]
 gb|ABI21439.1|  polymerase PB1 [Influenza A virus (A/New York/795/1993(H3N2))]
 gb|ABI21472.1|  polymerase PB1 [Influenza A virus (A/New York/799/1993(H3N2))]
 gb|ABI30397.1|  polymerase PB1 [Influenza A virus (A/New York/717/1994(H3N2))]
 gb|ABI30408.1|  polymerase PB1 [Influenza A virus (A/Wellington/26/2000(H3N2))]
 gb|ABI30873.1|  polymerase PB1 [Influenza A virus (A/New York/796/1993(H3N2))]
 gb|ABI92332.1|  polymerase PB1 [Influenza A virus (A/New York/737/1994(H3N2))]
 gb|ABI92475.1|  polymerase PB1 [Influenza A virus (A/Western Australia/2/2000(H3N2))]
 gb|ABI92486.1|  polymerase PB1 [Influenza A virus (A/Western Australia/3/2000(H3N2))]
 gb|ABI92497.1|  polymerase PB1 [Influenza A virus (A/Western Australia/8/2000(H3N2))]
 gb|ABI92508.1|  polymerase PB1 [Influenza A virus (A/Western Australia/11/2000(H3N2))]
 gb|ABI93080.1|  polymerase PB1 [Influenza A virus (A/New South Wales/25/2000(H3N2))]
 gb|ABI93091.1|  polymerase PB1 [Influenza A virus (A/New South Wales/27/2000(H3N2))]
 gb|ABI93102.1|  polymerase PB1 [Influenza A virus (A/New South Wales/28/2000(H3N2))]
 gb|ABI93113.1|  polymerase PB1 [Influenza A virus (A/New South Wales/29/2000(H3N2))]
 gb|ABI93124.1|  polymerase PB1 [Influenza A virus (A/New South Wales/36/2000(H3N2))]
 gb|ABI95313.1|  polymerase PB1 [Influenza A virus (A/New South Wales/33/2000(H3N2))]
 gb|ABJ09115.1|  polymerase PB1 [Influenza A virus (A/Canterbury/75/2000(H3N2))]
 gb|ABJ09148.1|  polymerase PB1 [Influenza A virus (A/New York/706/1993(H3N2))]
 gb|ABJ09225.1|  polymerase PB1 [Influenza A virus (A/New York/800/1993(H3N2))]
 gb|ABJ09346.1|  polymerase PB1 [Influenza A virus (A/New South Wales/32/2000(H3N2))]
 gb|ABJ09368.1|  polymerase PB1 [Influenza A virus (A/New South Wales/35/2000(H3N2))]
 gb|ABJ16705.1|  polymerase PB1 [Influenza A virus (A/South Australia/59/2000(H3N2))]
 gb|ABJ16749.1|  polymerase PB1 [Influenza A virus (A/South Australia/66/2000(H3N2))]
 gb|ABJ16760.1|  polymerase PB1 [Influenza A virus (A/South Australia/67/2000(H3N2))]
 gb|ABJ16771.1|  polymerase PB1 [Influenza A virus (A/South Australia/68/2000(H3N2))]
 gb|ABJ16793.1|  polymerase PB1 [Influenza A virus (A/South Australia/74/2000(H3N2))]
 gb|ABK40069.1|  polymerase PB1 [Influenza A virus (A/South Australia/52/2000(H3N2))]
 gb|ABK40083.1|  polymerase PB1 [Influenza A virus (A/South Australia/76/2000(H3N2))]
 gb|ABK40620.1|  polymerase PB1 [Influenza A virus (A/Queensland/1/2000(H3N2))]
 gb|ABK40686.1|  polymerase PB1 [Influenza A virus (A/New York/704/1994(H3N2))]
 gb|ABK40708.1|  polymerase PB1 [Influenza A virus (A/Western Australia/1/2000(H3N2))]
 gb|ABK40719.1|  polymerase PB1 [Influenza A virus (A/Western Australia/5/2000(H3N2))]
 gb|ABK40730.1|  polymerase PB1 [Influenza A virus (A/Western Australia/7/2000(H3N2))]
 gb|ABK79989.1|  polymerase PB1 [Influenza A virus (A/South Australia/75/2000(H3N2))]
 gb|ABK80000.1|  polymerase PB1 [Influenza A virus (A/South Australia/77/2000(H3N2))]
 gb|ABK80099.1|  polymerase PB1 [Influenza A virus (A/Queensland/8/2000(H3N2))]
 gb|ABK80110.1|  polymerase PB1 [Influenza A virus (A/Queensland/9/2000(H3N2))]
 gb|ABL67184.1|  polymerase PB1 [Influenza A virus (A/South Australia/2/2000(H3N2))]
 gb|ABO32759.1|  polymerase PB1 [Influenza A virus (A/South Australia/49/2000(H3N2))]
 gb|ABO32770.1|  polymerase PB1 [Influenza A virus (A/South Australia/80/2000(H3N2))]
 gb|ABO33066.1|  polymerase PB1 [Influenza A virus (A/South Australia/15/2000(H3N2))]
 gb|ABQ01341.1|  polymerase PB1 [Influenza A virus (A/South Australia/16/2000(H3N2))]
 gb|ABQ01352.1|  polymerase PB1 [Influenza A virus (A/South Australia/47/2000(H3N2))]
 gb|ABQ44391.1|  polymerase PB1 [Influenza A virus (A/South Australia/73/2000(H3N2))]
 gb|ABR28523.1|  polymerase PB1 [Influenza A virus (A/Western Australia/4/2000(H3N2))]
 gb|ABR28798.1|  polymerase PB1 [Influenza A virus (A/Auckland/588/2000(H3N2))]
 gb|ABS49973.1|  polymerase PB1 [Influenza A virus (A/Auckland/589/2000(H3N2))]
 gb|ABS50039.1|  polymerase PB1 [Influenza A virus (A/Auckland/601/2000(H3N2))]
 gb|ACF54562.1|  polymerase PB1 [Influenza A virus (A/Panama/2007/1999(H3N2))]
 gb|ACJ67530.1|  polymerase PB1 [Influenza A virus (A/ferret/Maryland/P10-UMD/2008(H9N2))]
 gb|ACL12137.1|  polymerase PB1 [Influenza A virus (A/Shangdong/9/1993(H3N2))]
 gb|ACO95267.1|  polymerase PB1 [Influenza A virus (A/Sydney/5/1997(H3N2))]
Length=757

 Score = 1571 bits (4068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACD65217.1|  polymerase PB1 [Influenza A virus (A/swine/Ohio/24366/07(H1N1))]
 gb|ACH69550.1|  polymerase PB1 [Influenza A virus (A/swine/OH/511445/2007(H1N1))]
Length=757

 Score = 1571 bits (4067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVN+AVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNSAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABP49434.1|  polymerase PB1 [Influenza A virus (A/South Australia/81/2000(H3N2))]
Length=757

 Score = 1571 bits (4067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMA+QLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMAIQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80389.1|  polymerase PB1 [Influenza A virus (A/New York/775/1993(H3N2))]
Length=757

 Score = 1571 bits (4067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRN+HIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNIHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80169.1|  polymerase PB1 [Influenza A virus (A/New York/749/1994(H3N2))]
Length=757

 Score = 1571 bits (4067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSG+PVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGIPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD94874.1|  polymerase PB1 [Influenza A virus (A/New York/582/1996(H3N2))]
 gb|ABG37139.1|  polymerase PB1 [Influenza A virus (A/New York/571/1996(H3N2))]
Length=757

 Score = 1571 bits (4067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSC+ETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCIETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAL87924.1|AF455726_1  polymerase subunit [Influenza A virus (A/Swine/Minnesota/55551/00 
(H1N2))]
Length=757

 Score = 1571 bits (4067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS+KGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSQKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEE+E
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEME  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAM+TYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMVTYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADM IGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMKIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABS50017.1|  polymerase PB1 [Influenza A virus (A/Auckland/599/2000(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GL+VSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLMVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABJ09357.1|  polymerase PB1 [Influenza A virus (A/New South Wales/34/2000(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLG+KKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGKKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG88385.1|  polymerase PB1 [Influenza A virus (A/New York/686/1995(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCH+GDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHKGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80103.1|  polymerase PB1 [Influenza A virus (A/New York/710/1994(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80004.1|  polymerase PB1 [Influenza A virus (A/New York/664/1995(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAP+HEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPSHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABF18011.1|  polymerase subunit PB1 [Influenza A virus (A/swine/Manitoba/12707/2005(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 753/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELK LWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKSLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVN+AVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNSAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG48288.1|  polymerase PB1 [Influenza A virus (A/New York/756/1993(H3N2))]
 gb|ABG48365.1|  polymerase PB1 [Influenza A virus (A/New York/764/1993(H3N2))]
 gb|ABG88759.1|  polymerase PB1 [Influenza A virus (A/New York/781/1993(H3N2))]
 gb|ABI21274.1|  polymerase PB1 [Influenza A virus (A/New York/768/1993(H3N2))]
 gb|ABI21483.1|  polymerase PB1 [Influenza A virus (A/New York/801/1993(H3N2))]
 gb|ABI21494.1|  polymerase PB1 [Influenza A virus (A/New York/802/1993(H3N2))]
 gb|ABI21505.1|  polymerase PB1 [Influenza A virus (A/New York/803/1993(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKTGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG47991.1|  polymerase PB1 [Influenza A virus (A/New York/720/1994(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+S+NNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESINNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG47892.1|  polymerase PB1 [Influenza A virus (A/New York/685/1995(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESAD+SIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADISIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG26887.1|  polymerase PB1 [Influenza A virus (A/New York/697/1995(H3N2))]
 gb|ABG37348.1|  polymerase PB1 [Influenza A virus (A/New York/693/1995(H3N2))]
 gb|ABG67198.1|  polymerase PB1 [Influenza A virus (A/New York/677/1995(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDV+ESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVIESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABE14510.1|  polymerase PB1 [Influenza A virus (A/New York/634/1995(H3N2))]
 gb|ABG67675.1|  polymerase PB1 [Influenza A virus (A/New York/639/1995(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKSGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY64350.1|  polymerase PB1 [Influenza A virus (A/New York/264/1999(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPG+FENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGLFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAL87926.1|AF455728_1  polymerase subunit [Influenza A virus (A/Swine/Indiana/P12439/00 
(H1N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYS+KGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSKKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFE TSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFELTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSI+NTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSIINTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD15677.1|  polymerase PB1 [Influenza A virus (A/Canterbury/101/2000(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLL+DGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLLDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB80522.1|  polymerase PB1 [Influenza A virus (A/New York/524/1997(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPE+NEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEBNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLF+KDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFLKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB77861.1|  polymerase PB1 [Influenza A virus (A/New York/503/1997(H3N2))]
 gb|ABB77872.1|  polymerase PB1 [Influenza A virus (A/New York/508/1997(H3N2))]
 gb|ABB79724.1|  polymerase PB1 [Influenza A virus (A/New York/515/1997(H3N2))]
 15 more sequence titles
 gb|ABB80089.1|  polymerase PB1 [Influenza A virus (A/New York/512/1998(H3N2))]
 gb|ABB80167.1|  polymerase PB1 [Influenza A virus (A/New York/509/1997(H3N2))]
 gb|ABB80204.1|  polymerase PB1 [Influenza A virus (A/New York/519/1998(H3N2))]
 gb|ABB80248.1|  polymerase PB1 [Influenza A virus (A/New York/534/1998(H3N2))]
 gb|ABB80511.1|  polymerase PB1 [Influenza A virus (A/New York/523/1998(H3N2))]
 gb|ABB80543.1|  polymerase PB1 [Influenza A virus (A/New York/531/1998(H3N2))]
 gb|ABB80690.1|  polymerase PB1 [Influenza A virus (A/New York/542/1998(H3N2))]
 gb|ABB80701.1|  polymerase PB1 [Influenza A virus (A/New York/543/1998(H3N2))]
 gb|ABC50175.1|  polymerase PB1 [Influenza A virus (A/New York/510/1998(H3N2))]
 gb|ABC50186.1|  polymerase PB1 [Influenza A virus (A/New York/511/1997(H3N2))]
 gb|ABC67584.1|  polymerase PB1 [Influenza A virus (A/New York/526/1997(H3N2))]
 gb|ABD15545.1|  polymerase PB1 [Influenza A virus (A/New York/544/1998(H3N2))]
 gb|ABD15556.1|  polymerase PB1 [Influenza A virus (A/New York/549/1998(H3N2))]
 gb|ABD15578.1|  polymerase PB1 [Influenza A virus (A/New York/530/1998(H3N2))]
 gb|ABD15600.1|  polymerase PB1 [Influenza A virus (A/New York/514/1998(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLF+KDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFLKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY98327.1|  polymerase PB1 [Influenza A virus (A/New York/323/1999(H3N2))]
Length=757

 Score = 1570 bits (4066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEV+QQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVIQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACH58919.1|  polymerase PB1 [Influenza A virus (A/swine/Minnesota/7209/2007(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRMNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELK+LWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKRLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVN+AVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNSAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACE78120.1|  polymerase PB1 [Influenza A virus (A/swine/Korea/CY07/2007(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRR+RDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRIRDNMTKKMVTQRTIGKKKQRVNKRNYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAE+LASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEVLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALI+NAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIINAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80092.1|  polymerase PB1 [Influenza A virus (A/New York/707/1994(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQT+CVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTECVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG80026.1|  polymerase PB1 [Influenza A virus (A/New York/667/1995(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEE RRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEEFRRQK  757


>gb|ABG26876.1|  polymerase PB1 [Influenza A virus (A/New York/696/1994(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVE LARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVEILARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABE14060.1|  polymerase PB1 [Influenza A virus (A/New York/625/1996(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKAPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABE13603.1|  polymerase PB1 [Influenza A virus (A/New York/606/1995(H3N2))]
 gb|ABE14038.1|  polymerase PB1 [Influenza A virus (A/New York/619/1996(H3N2))]
 gb|ABE14887.1|  polymerase PB1 [Influenza A virus (A/New York/637/1996(H3N2))]
 gb|ABE15620.1|  polymerase PB1 [Influenza A virus (A/New York/648/1995(H3N2))]
 gb|ABG47859.1|  polymerase PB1 [Influenza A virus (A/New York/647/1995(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTR+D
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRMD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD94885.1|  polymerase PB1 [Influenza A virus (A/New York/591/1996(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRI+KEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIEKEEFSEIMKICSTIEELRRQK  757


>gb|ABD77837.1|  polymerase PB1 [Influenza A virus (A/New York/558/1997(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKL+GINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLMGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAX11643.1|  polymerase PB1 [Influenza A virus (A/New York/110/2002(H3N2))]
 gb|AAX57672.1|  polymerase PB1 [Influenza A virus (A/New York/109/2002(H3N2))]
 gb|ABA42343.1|  polymerase PB1 [Influenza A virus (A/New York/403/2002(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYR CKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRICKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAO15324.1|AF225520_1  polymerase basic 1 [Influenza A virus (A/sw/Shizuoka/119/97(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR++FESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIEFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB80193.1|  polymerase PB1 [Influenza A virus (A/New York/518/1998(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSC+ETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCIETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNM+NNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMVNNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB80100.1|  polymerase PB1 [Influenza A virus (A/New York/516/1997(H3N2))]
Length=757

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLF+KDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFLKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            +RNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  VRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>emb|CAC84754.1|  polymerase subunit 1 [Influenza A virus (swine/Finistere/127/99(H3N2))]
Length=756

 Score = 1570 bits (4065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/756 (98%), Positives = 754/756 (99%), Gaps = 0/756 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQ  756
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQ
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQ  756


>gb|ABY81661.2|  polymerase PB1 [Influenza A virus (A/swine/Korea/JNS06/2004(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 753/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKG+WTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGRWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+ KRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVTKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYIN+TGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIG TVIKNNMINNDLG
Sbjct  481  KSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGATVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABJ09247.1|  polymerase PB1 [Influenza A virus (A/Western Australia/12/2000(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABI21406.1|  polymerase PB1 [Influenza A virus (A/New York/791/1993(H3N2))]
 gb|ABI93069.1|  polymerase PB1 [Influenza A virus (A/New South Wales/20/1999(H3N2))]
 gb|ABJ09324.1|  polymerase PB1 [Influenza A virus (A/New South Wales/21/1999(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFE FFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFENFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG47958.1|  polymerase PB1 [Influenza A virus (A/New York/715/1994(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPN YN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNSYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG48332.1|  polymerase PB1 [Influenza A virus (A/New York/761/1993(H3N2))]
 gb|ABG80356.1|  polymerase PB1 [Influenza A virus (A/New York/767/1993(H3N2))]
 gb|ABI21373.1|  polymerase PB1 [Influenza A virus (A/New York/788/1993(H3N2))]
 gb|ABI21384.1|  polymerase PB1 [Influenza A virus (A/New York/789/1993(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFE+FFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFERFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD79175.1|  polymerase PB1 [Influenza A virus (A/New York/579/1997(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAP+HEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPDHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRG+LEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGVLEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD79131.1|  polymerase PB1 [Influenza A virus (A/New York/560/1997(H3N2))]
 gb|ABD79142.1|  polymerase PB1 [Influenza A virus (A/New York/564/1997(H3N2))]
 gb|ABD79153.1|  polymerase PB1 [Influenza A virus (A/New York/565/1996(H3N2))]
 8 more sequence titles
 gb|ABD79164.1|  polymerase PB1 [Influenza A virus (A/New York/575/1996(H3N2))]
 gb|ABD79186.1|  polymerase PB1 [Influenza A virus (A/New York/583/1997(H3N2))]
 gb|ABD79197.1|  polymerase PB1 [Influenza A virus (A/New York/566/1997(H3N2))]
 gb|ABD79208.1|  polymerase PB1 [Influenza A virus (A/New York/574/1996(H3N2))]
 gb|ABD79230.1|  polymerase PB1 [Influenza A virus (A/New York/581/1997(H3N2))]
 gb|ABD79241.1|  polymerase PB1 [Influenza A virus (A/New York/587/1996(H3N2))]
 gb|ABD94907.1|  polymerase PB1 [Influenza A virus (A/New York/594/1996(H3N2))]
 gb|ABE13126.1|  polymerase PB1 [Influenza A virus (A/New York/572/1996(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAP+HEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPDHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY64250.1|  polymerase PB1 [Influenza A virus (A/New York/253/1999(H3N2))]
 gb|AAY98115.1|  polymerase PB1 [Influenza A virus (A/New York/280/1999(H3N2))]
 gb|AAY98235.1|  polymerase PB1 [Influenza A virus (A/New York/320/1999(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEEL+RQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELKRQK  757


>gb|AAX47533.1|  polymerase PB1 [Influenza A virus (A/New York/96/2002(H3N2))]
Length=758

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYR CKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRICKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD15644.1|  polymerase PB1 [Influenza A virus (A/New York/550/1998(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKL+RRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLRRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABC59715.1|  polymerase PB1 [Influenza A virus (A/turkey/Ohio/313053/04(H3N2))]
 gb|ACD88667.1|  polymerase PB1 [Influenza A virus (A/turkey/OH/313053/2004(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELK+LWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKRLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVN+AVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNSAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABC02296.1|  polymerase PB1 [Influenza A virus (A/New York/527/1998(H3N2))]
 gb|ABG88737.1|  polymerase PB1 [Influenza A virus (A/New York/754/1993(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT++QPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKSQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB96539.1|  polymerase PB1 [Influenza A virus (A/New York/535/1998(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIK+EEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKREEFSEIMKICSTIEELRRQK  757


>gb|AAZ43413.1|  polymerase PB1 [Influenza A virus (A/Memphis/59/99(H3N2))]
 gb|ABU80328.1|  polymerase PB1 [Influenza A virus (A/Auckland/598/2000(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEE+E
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEME  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY98404.1|  polymerase PB1 [Influenza A virus (A/New York/338/1999(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIK+NMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKSNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAX76751.1|  polymerase PB1 [Influenza A virus (A/New York/194/2003(H3N2))]
 gb|AAY47083.1|  polymerase PB1 [Influenza A virus (A/New York/195/2003(H3N2))]
 gb|ABI92739.1|  polymerase PB1 [Influenza A virus (A/Western Australia/45/2003(H3N2))]
Length=757

 Score = 1570 bits (4064),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 743/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYR CKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRICKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACO36361.1|  polymerase PB1 [Influenza A virus (A/Siena/3/1995(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVM+SM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMKSMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACK99484.1|  polymerase PB1 [Influenza A virus (A/Siena/1/1997(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNH+GIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHDGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABS50006.1|  polymerase PB1 [Influenza A virus (A/Auckland/596/2000(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEK+RPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKVRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIE+LRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEKLRRQK  757


>gb|ABJ09269.1|  polymerase PB1 [Influenza A virus (A/New South Wales/5/1999(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIE+LRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEDLRRQK  757


>gb|ABI20944.1|  polymerase PB1 [Influenza A virus (A/New York/743/1994(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KE+IE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEKIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG88781.1|  polymerase PB1 [Influenza A virus (A/New York/783/1993(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVI+NNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIRNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFE+FFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFERFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG88748.1|  polymerase PB1 [Influenza A virus (A/New York/755/1993(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMT KMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTNKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRN+HIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNIHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABG26865.1|  polymerase PB1 [Influenza A virus (A/New York/695/1995(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKTGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAK+MEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKNMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARID R+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDVRIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABF21245.1|  polymerase PB1 [Influenza A virus (A/Panama/2007/1999(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRG+LCNPLNPFVSHKE++SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGKLCNPLNPFVSHKELESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD94940.1|  polymerase PB1 [Influenza A virus (A/New York/600/1996(H3N2))]
 gb|ABF82703.1|  polymerase PB1 [Influenza A virus (A/New York/599/1996(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAP+HEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPDHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD94830.1|  polymerase PB1 [Influenza A virus (A/New York/536/1998(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASI+LKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASINLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD77694.1|  polymerase PB1 [Influenza A virus (A/New York/569/1997(H3N2))]
 gb|ABD94929.1|  polymerase PB1 [Influenza A virus (A/New York/596/1996(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMES++KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESIDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD77617.1|  polymerase PB1 [Influenza A virus (A/Canterbury/10/2001(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 754/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEW RNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWLRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY46444.1|  polymerase PB1 [Influenza A virus (A/New York/250/1998(H3N2))]
 gb|AAY64410.1|  polymerase PB1 [Influenza A virus (A/New York/287/1998(H3N2))]
 gb|AAZ38481.1|  polymerase PB1 [Influenza A virus (A/New York/324/1999(H3N2))]
 gb|ABB02955.1|  polymerase PB1 [Influenza A virus (A/New York/448/1998(H3N2))]
 gb|ABI20955.1|  polymerase PB1 [Influenza A virus (A/New York/744/1994(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLET+EVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETIEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAX57822.1|  polymerase PB1 [Influenza A virus (A/New York/167/1999(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEE+E
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEME  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQS+ GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSRAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY18174.1|  polymerase PB1 [Influenza A virus (A/New York/138/1999(H3N2))]
 gb|AAY28283.1|  polymerase PB1 [Influenza A virus (A/New York/137/1999(H3N2))]
 gb|AAY44763.1|  polymerase PB1 [Influenza A virus (A/New York/145/1999(H3N2))]
 gb|ABB05202.1|  polymerase PB1 [Influenza A virus (A/New York/423/1999(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVV+PAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVVPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAM78509.1|AF483601_1  polymerase complex subunit PB1 [Influenza A virus (A/Paris/908/97(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+K+EIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKDEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAL87922.1|AF455724_1  polymerase subunit [Influenza A virus (A/Swine/North Carolina/98225/01(H1N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 753/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKG+WTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGRWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+ K+GYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVTKKGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVV PAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVTPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD61334.1|  polymerase PB1 [Influenza A virus (A/Canterbury/96/2000(H3N2))]
 gb|ABE12114.1|  polymerase PB1 [Influenza A virus (A/Canterbury/92/2000(H3N2))]
 gb|ABG79949.1|  polymerase PB1 [Influenza A virus (A/Canterbury/97/2000(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYT+DTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTIDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABD15655.1|  polymerase PB1 [Influenza A virus (A/Canterbury/90/2000(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQ+TRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQKTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABC40616.1|  polymerase PB1 [Influenza A virus (A/New York/460/1999(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKK+TKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKHTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB80756.1|  polymerase PB1 [Influenza A virus (A/New York/525/1998(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKI+KIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIKKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ABB80721.1|  polymerase PB1 [Influenza A virus (A/New York/547/1997(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 741/757 (97%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMA+LGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMAKLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLF+KDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFLKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|AAY98125.1|  polymerase PB1 [Influenza A virus (A/New York/282/1999(H3N2))]
Length=757

 Score = 1569 bits (4063),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNL+N
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLHN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACH58913.1|  polymerase PB1 [Influenza A virus (A/swine/Minnesota/578/2007(H3N2))]
Length=757

 Score = 1569 bits (4062),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 753/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETME+VQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEIVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELK LWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKSLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVN+AVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNSAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACI26579.1|  polymerase PB1 [Influenza A virus (A/Siena/10/1990(H3N2))]
Length=757

 Score = 1569 bits (4062),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 755/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKRGYLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYIT+NQPEWFRNILS+APIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            RMK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  RMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYTKT YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DY+GRLCNPLNPFVSHKEI+SVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYQGRLCNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757


>gb|ACE78116.1|  polymerase PB1 [Influenza A virus (A/swine/Korea/CY04/2007(H3N2))]
 gb|ACE78118.1|  polymerase PB1 [Influenza A virus (A/swine/Korea/CY05/2007(H3N2))]
Length=757

 Score = 1569 bits (4062),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 742/757 (98%), Positives = 753/757 (99%), Gaps = 0/757 (0%)

Query  1    MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60
            MDVNPTLLFLK+PAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE
Sbjct  1    MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTE  60

Query  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120
            TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD
Sbjct  61   TGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVD  120

Query  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIE  180
            KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESM+KEEIE
Sbjct  121  KLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMDKEEIE  180

Query  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRA  240
            ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQR+NKR YLIRALTLNTMTKDAERGKLKRRA
Sbjct  181  ITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRSYLIRALTLNTMTKDAERGKLKRRA  240

Query  241  IATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISF  300
            IATPGMQIRGFVYFVE LARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTE+SF
Sbjct  241  IATPGMQIRGFVYFVEILARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSF  300

Query  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360
            TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK
Sbjct  301  TITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESK  360

Query  361  RMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420
            +MK+RTQIPAEMLASIDLKYFNEST+KKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG
Sbjct  361  KMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLG  420

Query  421  VSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480
            VSILNLGQKKYT+T YWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK
Sbjct  421  VSILNLGQKKYTRTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKK  480

Query  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLG  540
            KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSG+NESADMSIGVTVIKNNMINNDLG
Sbjct  481  KSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVIKNNMINNDLG  540

Query  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYN  600
            PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSK GLLVSDGGPNLYN
Sbjct  541  PATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKAGLLVSDGGPNLYN  600

Query  601  IRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660
            IRNLHIPEVCLKWELMD+DYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV
Sbjct  601  IRNLHIPEVCLKWELMDEDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAV  660

Query  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720
            ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS
Sbjct  661  ATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVS  720

Query  721  RARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK  757
            RARIDAR+DFESGRIKKEEFSEIMKICSTIEELRRQK
Sbjct  721  RARIDARIDFESGRIKKEEFSEIMKICSTIEELRRQK  757

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Michael Strong

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User:Michael Strong/H1N1/PB1

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Contents

Structure

Sequence Polymorphisms

Multiple Sequence Alignment

BLAST

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