File list
From Proteopedia
 Date |
Name | User | Size | Description |
|---|---|---|---|---|
| 20:44, 9 March 2009 | 2vv5_aligned_cao.pdb (file) | Eric Martz | 119 KB | (Seven chains from 2vv5, with chains B-G aligned to chain A with DeepView's Magic Fit. Alpha carbon atoms only.) |
| 20:39, 9 March 2009 | 2oau_aligned_cao.pdb (file) | Eric Martz | 118 KB | (Seven chains from 2oau, with chains B-G aligned to chain A with DeepView. Alpha carbon atoms only.) |
| 17:28, 8 March 2009 | 1B9C.jpg (file) | Lois A. Fridmann | 49 KB | (This is a picture taken from a Jmol file for the mutant GFP) |
| 13:16, 8 March 2009 | AC1.pdb (file) | Alexander Berchansky | 1,000 KB | (2ace aligned on 2vja) |
| 22:40, 7 March 2009 | 2oau_2vv5_27-112_morph.pdb.gz (file) | Eric Martz | 813 KB | (Morph (by Yale Morph Server beta.cgi) of 2oau to 2vv5. Prior to submitting these PDB files, residues 113-281 were deleted, leaving only the N-terminal channel domain for the morph.) |
| 22:02, 7 March 2009 | 2oau_2vv5_morph_cao.pdb.gz (file) | Eric Martz | 375 KB | (Obtained from http://www.molmovdb.org/cgi-bin/morph.cgi?ID=b182826-5521, the Yale Morph Server (beta.cgi) morphing 2oau to 2vv5. Only the alpha carbon atoms are preserved in this file.) |
| 21:48, 7 March 2009 | 2oau_2vv5_morph.pdb.gz (file) | Eric Martz | 2.5 MB | (Yale morph server (beta) morph from 2oau to 2vv5.) |
| 19:05, 7 March 2009 | Opm_periplasmic_topology.gif (file) | Eric Martz | 3 KB | (Downloaded from http://opm.phar.umich.edu/protein.php?pdbid=2oau and modified to include text labels.) |
| 18:37, 7 March 2009 | 2oau_opm.pdb.gz (file) | Eric Martz | 286 KB | (2oau with pseudoatoms representing the surfaces of the lipid bilayer, added by Orientations of Proteins in Membranes, http://opm.phar.umich.edu/protein.php?pdbid=2oau) |
| 17:14, 6 March 2009 | 5acn-7acn-sf4morph.pdb.gz (file) | Ralf Stephan | 7 KB | (Morph between 5acn and 7acn, hiding everything except SF3/SF4 and residues 358,421,424 and HOH.) |
| 22:37, 4 March 2009 | Dna_rotating.gif (file) | Eric Martz | 114 KB | (Intermittantly rotating segment of DNA double helix. Animated GIF created with images saved from RasMol, later used in DNA structure tutorials by Martz and Herráez in Chime and Jmol (see [http://molviz.org molviz.org]). Uploaded by the author, ) |
| 22:24, 4 March 2009 | Dna_earrings.jpg (file) | Eric Martz | 96 KB | (Image of earrings representing the DNA double helix, obtained from http://www.indiana.edu/~ensiweb/connections/genetics/genjewel.html) |
| 18:51, 2 March 2009 | Qp_1BGY_pocket.jvxl (file) | Karl Oberholser | 19 KB | (Surface of four substate binding sites of cyto b in 1bgy.pdb. Surface generated with Jmol commands Select :c,:o; isosurface surface_1bgy minset 1000 pocket cavity 1.2. The binding sites of this file appear as pockets with openings at the surface of the p) |
| 19:26, 27 February 2009 | Qp_1bgy.jvxl (file) | Karl Oberholser | 21 KB | (This surface file was made from 1BGY_cdeopq_fes4.pdb using the Jmol commands, Select :c,:o; isosurface surface_1bgy minset 1000 cavity 1.2.) |
| 19:19, 27 February 2009 | 1BGY_cdeopq_fes4.pdb (file) | Karl Oberholser | 966 KB | (This pdb file was made from 1BGY.pdb by using this script of Jmol commands: Select :c,:d,:e,:o,:p,:q,fes 4; write COORDS PDB "1BGY_cdeopq fes4" ) |
| 14:44, 25 February 2009 | 1kyo_modified.pdb (file) | Karl Oberholser | 1.09 MB | (Contains peptides c & n, cyto b, d & o, cyto c1, e & p, Rieske protein, hemes 501, 521, 502, 522, 503, 523, and 526, FES 504 and 524, and SMA 505 & 525.) |
| 14:28, 24 February 2009 | CC3094_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 89 KB | (Homology model of GGDEF domain of CC3094, Template 1w25, renamed) |
| 14:04, 24 February 2009 | CC0896_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 92 KB | (Homology model of GGDEF domain of CC0896, Template 1w25, renamed) |
| 12:18, 24 February 2009 | CC0857_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 89 KB | (Homology model of GGDEF domain of CC0857, Template 1w25, renamed) |
| 16:31, 23 February 2009 | CC0740_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 90 KB | (Homology model of GGDEF domain of CC0740, Template 1w25, renamed ) |
| 15:42, 23 February 2009 | CC0655_GGDEF_1w25_r.pdb (file) | Tilman Schirmer | 91 KB | (Homology model of GGDEF domain of CC0655, Template 1w25, renamed) |
| 14:53, 23 February 2009 | CC0091_GGDEF_1w25r.pdb (file) | Tilman Schirmer | 89 KB | (Homology model of GGDEF domain of CC0091, Template 1w25, renamed) |
| 17:06, 22 February 2009 | 3dqv_trimer1_trimer2_morph.pdb.gz (file) | Eric Martz | 844 KB | (Morph (Yale Morph Server beta.cgi, ID b318728-3599) between the two trimers in the asymmetric unit of 3dqv.) |
| 11:46, 22 February 2009 | ACHE5.pdb (file) | Alexander Berchansky | 1.95 MB | (Alignment 2ace, 1acj, 2cmf, 2ckm, 1ut6, 1odc ) |
| 02:59, 22 February 2009 | 3dpl_3dqv_acr_morph.pdb (file) | Eric Martz | 2.27 MB | (Morph of 3dpl to 3dqv, chains C and R only. Only one trimer was used from 3dqv (which contains 2 trimers in the asymmetric unit), namely, the one with chains named A, C, and R. This trimer was obtained from pqs.ebi.ac.ul as 3dqv_1.mmol. Morph done by Yale) |
| 16:32, 20 February 2009 | PdeA_CAUCR_GGDEF_1w25r.pdb (file) | Tilman Schirmer | 76 KB | (Homology model of GGDEF domain of PdeA_CAUCR, Template 1w25, renamed) |
| 16:05, 20 February 2009 | PopA_CAUCR_GGDEF_1w25r.pdb (file) | Tilman Schirmer | 80 KB | (Homology model of GGDEF domain of PopA_CAUCR, Template 1w25, renamed) |
| 15:40, 20 February 2009 | DgcB_CAUCR_1w25r.pdb (file) | Tilman Schirmer | 96 KB | (Homology model of GGDEF domain of PopA_CAUCR, Template 1w25, renamed) |
| 14:36, 20 February 2009 | DgcA_CAUCR_1w25r.pdb (file) | Tilman Schirmer | 87 KB | (Homology model of GGDEF domain of DgcA_CAUCR, template 1w25, renamed) |
| 12:36, 20 February 2009 | DgrA_CAUCR_PilZ_2rde.pdb (file) | Tilman Schirmer | 58 KB | (Homology model of PilZ domain of DgrA_CAUCR, Template 2rde) |
| 15:10, 19 February 2009 | 2nxb_chainAandB_superimposed.pdb (file) | Eran Hodis | 155 KB | (2nxb with chain A and chain B superimposed on each other via PyMOL's "align" function.) |
| 19:05, 18 February 2009 | Nest_1np4.gif (file) | James D Watson | 17 KB | (This is a figure of a nest motif taken from the help pages of the ProFunc website (http://www.ebi.ac.uk/profunc/).) |
| 20:12, 17 February 2009 | 2v89.png (file) | OCA | 337 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
| 19:03, 17 February 2009 | Morph_2ipy-2b3x.pdb.gz (file) | Ralf Stephan | 1.52 MB | (20 image morph between 2ipy and 2b3x, from Yale server) |
| 13:56, 17 February 2009 | 2e9s.png (file) | OCA | 429 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
| 16:34, 16 February 2009 | 3ews.png (file) | OCA | 416 KB | (Source Jena Library http://www.fli-leibniz.de/IMAGE.html) |
| 10:13, 15 February 2009 | Workbench_Edit5.jpg (file) | Roni Gordon | 10 KB | |
| 10:11, 15 February 2009 | Workbench_Edit4.jpg (file) | Roni Gordon | 11 KB | |
| 09:49, 15 February 2009 | Workbench_Edit3.jpg (file) | Roni Gordon | 2 KB | |
| 09:27, 15 February 2009 | Workbench_Edit2.jpg (file) | Roni Gordon | 11 KB | |
| 09:21, 15 February 2009 | Workbench_Edit1.jpg (file) | Roni Gordon | 10 KB | |
| 09:13, 15 February 2009 | Workbench_Login3.jpg (file) | Roni Gordon | 1 KB | |
| 08:50, 15 February 2009 | Workbench_Login2.jpg (file) | Roni Gordon | 5 KB | |
| 08:40, 15 February 2009 | Workbench_Login1.jpg (file) | Roni Gordon | 2 KB | |
| 15:15, 13 February 2009 | DgrA_CAUCR_PilZ_1ywu.pdb (file) | Tilman Schirmer | 51 KB | (Homology model of PilZ domain of DgrA_CAUCR, Template 1ywu) |
| 13:23, 13 February 2009 | CC3396_GGDEF_1w25.pdb (file) | Tilman Schirmer | 92 KB | (Homology model of GGDEF domain of CC3396, Template 1w25) |
| 13:10, 13 February 2009 | CC3094_GGDEF_1w25.pdb (file) | Tilman Schirmer | 108 KB | (Homology model of GGDEF domain of CC3094, Template 1w25) |
| 11:45, 13 February 2009 | CC0896_GGDEF_1w25.pdb (file) | Tilman Schirmer | 111 KB | (Homology model of GGDEF domain of CC0896, Template 1w25) |
| 09:51, 10 February 2009 | Dicoumarol.png (file) | Ralf Stephan | 60 KB | (structural formula of dicoumarol) |
| 09:33, 10 February 2009 | Coenzyme_Q10_structural.png (file) | Ralf Stephan | 46 KB | (stuctural formula for coenzyme Q10, created using bkchem ) |
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