Proteopedia:Supplementary materials
From Proteopedia
Articles in Proteopedia can be supplementary materials for publications in scientific journals. Such articles can enable readers to rotate molecular scenes with the same initial orientation, color schemes, and labeling as figures in the publication. Links to the supplementary materials in Proteopedia can be placed in the text of the publication, and/or in the .doc file included on the journal website as supplementary materials. The Proteopedia article can be developed in advance of publication, yet hidden from viewing by visitors to Proteopedia until publication occurs (see Proteopedia:Workbench).
Contents |
Examples
Methods
Proteopedia articles destined to be supplementary materials for journal publication can be developed in advance of publication, yet hidden from visitors to Proteopedia until the date of publication. Methods for doing this are described at Proteopedia:Workbench.
External Resources
Some journals have interactive figures in Jmol incorporated into online articles. These include Biochemical Journal and ACS Chemical Biology. Examples may be found at MoleculesInMotion.Com.
The International Union of Crystallography has provided a Toolkit for Jmol-Enhanced Figures. Announced in November, 2009, it was developed by Brian McMahon, Bob Hanson, and several students, and is described in this article in the Journal of Applied Crystallogaphy.
Other uses of Jmol in journals will be found at Journals Using Jmol (in the wiki at Jmol.Org).
References
- ↑ Dym O, Albeck S, Unger T, Jacobovitch J, Branzburg A, Michael Y, Frenkiel-Krispin D, Wolf SG, Elbaum M. Crystal structure of the Agrobacterium virulence complex VirE1-VirE2 reveals a flexible protein that can accommodate different partners. Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11170-5. Epub 2008 Aug 4. PMID:18678909
