Ribosomal protein S15
From Proteopedia
Ribosomal protein S15 (RPS15) is one of the 22 proteins which belong to the small subunit of the ribosome. It is involved in the early steps of ribosome assembly. The images at the left and at the right correspond to one representative RPS15, i.e. the crystal structure of Ribosomal protein S15 from Thermus thermophilus (2zm6, chain O).
3D Structures of Ribosomal protein S15
S15
1a32 – RPS15 – Geobacillus stearothermophilus 1ab3, 2fkx - TtRPS15 – Thermus thermophilus - NMR 1kuq, 1f7y, 1dk1 - TtRPS15+16S RRNA fragment 2vaz – EcRPS15+RPSO mRNA operator – Escherichia coli – Cryo-EM
S15 in small ribosomal subunit
2zm6, 1n36, 1j5e - TtRPS15 in 30S ribosomal subunit+THX+16S RRNA 2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3oto - TtRPS15 in 30S ribosomal subunit+16S RRNA+RNA fragment 3i8g, 3i8h - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA+tRNA-Phe 3kc4 – EcRPS15 in 30S ribosomal subunit 3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofo, 3ofp, 3or9, 3ora, 3kc4 - EcRPS15 in 30S ribosomal subunit+16S RRNA 1i94, 1fka - TtRPS15 in 30S ribosomal subunit+16S RRNA 1p87, 1p6g - EcRPS15 in 30S ribosomal subunit+16S RRNA – Cryo-EM 3bbn - RPS15 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach 2zkq – RPS15 in 40S ribosomal subunit+18S RRNA - dog
S15 in small + large ribosomal subunit
1ml5, 1eg0 - EcRPS15 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
S15 in small ribosomal subunit+ chain release factor
3mr8, 3ms0 – TtRPS15 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA 3d5a, 3d5c, 3f1e, 3f1g - TtRPS15 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA 2b64 - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1 2b9m - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2 2x9r, 2x9t, 2wh1, 2wh3 - TtRPS15 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA 3f1e, 3f1g - TtRPS15 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
S15 in small ribosomal subunit+tRNA+mRNA
2hgi - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet 2hgp - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA 2i2p, 2i2u - EcRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA 2hgr - TtRPS15 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA 1yl4 – TtRPS15 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator 1pns - EcRPS15 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA 1xnq, 1xnr- TtRPS15 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
S15 in small ribosomal subunit+A-site tRNA
2uxd , 2uxc - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA 1n32, 1n33 - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA 1n34 - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA 1xmo, 1xmq - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA 2uxb - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
S15 in small ribosomal subunit+P-site tRNA
3i8g - TtRPS15 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA 3i8h, 3i9b, 3i9d - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA 1ibk - TtRPS15 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA 2wwl - EcRPS15 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli 3i1q - EcRPS15 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA 3i1s, 3i1z, 3i21 - EcRPS15 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
S15 in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtRPS15 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
S15 in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA 2b9o - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA 2qnh - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
S15 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - EcRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM 1jgo, 1jgp, 1jgq, 1gix - TtRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA 3e1a, 3e1c - EcRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
S15 in small ribosomal subunit + antibiotics
1i95 - TtRPS15 in 30S ribosomal subunit+16S RRNA+edeine 1i97 - TtRPS15 in 30S ribosomal subunit+16S RRNA+tetracycline 1hnw - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline 1hnx - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin 1hnz - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B 1fjg - TtRPS15 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin 2qbb, 2qb9 - EcRPS15 in 30S ribosomal subunit+16S RRNA+kasugamyin 2hhh - TtRPS15 in 30S ribosomal subunit+16S RRNA+kasugamyin 2f4v - TtRPS15 in 30S ribosomal subunit+16S RRNA+designed antibiotic 1vs5, 1vs7 - EcRPS15 in 30S ribosomal subunit+16S RRNA+gentamicin 2qan, 2qal - EcRPS15 in 30S ribosomal subunit+16S RRNA+neomycin 2qou, 2qow - EcRPS15 in 30S ribosomal subunit+16S RRNA+spectinomycin 2qoy, 2qp0 - EcRPS15 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin 2z4k, 2z4m - EcRPS15 in 30S ribosomal subunit+16S RRNA+paromomycin 2j00, 2j02 - TtRPS15 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA 2wdg, 2wdh, 2wdk, 2wdm - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin 3knj, 3knh - TtRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin 3knl, 3knn - TtRPS15 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
S15 in small ribosomal subunit + ribosome recycling factor
2qbd, 2qbf – EcRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor 2qbh, 2qbj - EcRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin 2v46, 2v48 - TtRPS15 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
S15 in small ribosomal subunit + elongation factor
2wri, 2wrk - TtRPS15 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G 2wrn, 2wrq - TtRPS15 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4 3fic - TtRPS15 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A 3fih - EcRPS15 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU 3huw, 3huy - TtRPS15 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P 1s1h - yRPS15 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast
S15 in small ribosomal subunit + translation initiation factor
1i96 - TtRPS15 in 30S ribosomal subunit+THX+IF3+16S RRNA 1hr0 - TtRPS15 in 30S ribosomal subunit+THX+IF+16S RRNA
S15 in small ribosomal subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - TtRPS15 in 30S ribosomal subunit+toxin RelE+16S RRNA 1voq, 1vos , 1vov, 1vox, 1voz - EcRPS15 in 30S ribosomal subunit+protein Y+16S RRNA 2xfz, 2xg1 - TtRPS15 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA 3jyv - RPS15+RPS0+RPS2+RPS3+RPS5+RPS9+RPS11+RPS13+RPS14+RPS16+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - Thermomyces lanuginosus
S15 in part of small ribosomal subunit
3iy8 - EcRPS15+EcRPS5+EcRPS6+EcRPS9+EcRPS9 EcRPS8+EcRPS11+EcRPS12+EcRPS16+EcRPS17+EcRPS18+Leishmania taretolae mRNA 1g1x - TtRPS15+TtRPS6+TtRPS18+16S RRNA fragment 1qd7 – TtRPS15+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS17+TtRPS20+16S RRNA fragment
