User:Alice Harmon/Notes
From Proteopedia
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Pages needed
edit calmodulin pages
edit Ca2+/Calmodulin dependent protein kinase page
Create CaM-binding motifs
also http://en.wikipedia.org/wiki/Calmodulin
see Proteopedia:Policy
For PYR-ABI1 page:
PP2C structures
1a6q – hPP2C
2iq1 – hPP2C κ
2p8e – hPP2C β
2cm1 – PP2C + Mn – Micobacterium tuberculosis
3d8k – PP2C – Toxoplasma gondii
3jrq, 3kdj, 3nmn – AtPP2C + Pyl1 – Arabidopsis thaliana
3nmt, 3kb3, 3nmv, 3ujl – AtPP2C + Pyl2
4ds8 – AtPP2C + Pyl3 + Mn
3rt0 – AtPP2C (mutant) + Pyl10
3qn1, 3zvu – AtPP2C + Pyr1
3ujg – AtPP2C + SNRK2
3ujk – AtPP2C
Pyr/PYL/RCAR structures
3kay apo AtPYL1
3kdh, 3kaz apo AtPYL2
3K3K AtPyr1 dimer, one monomor is bound to ABA and the other unliganded
3jrs AtPYL1 in complex with ABA
3kdi, 3kb0 AtPYL2 in complex with ABA
3nmh AtPYL2 in complex with pyrabactin
3nmp AtPYL2 mutant A93F in complex with pyrabactin
3nmn AtPYL1.pyrabactin in complex with ABI1
3jrq, 3kdj AtPYL1.ABA in complex with ABI1
3kb3 AtPYL1.ABA in complex with HAB1
3nmt AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase HAB1
3nmv AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase ABI1
add link to kinase domain page on
PKA pages
Goodsells PKA article on PDB website
Editing issues
HTML tags don't work inside scene tags:
superscript works fine here: Ca2+-bound CAD
but not here:
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In the green tag, the tag Ca<sup>2+</sup> and the text before it are not rendered.
headings that are in scrollable sections are not included in the the page index
Can load scene using a different structure into a frame, but can't change the caption of the frame.
ABA signaling
Clearest picture of Pyr1 gate - latch is in Annu Reviews article
unused:
