User:Alice Harmon/Notes

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Pages needed

edit calmodulin pages
edit Ca2+/Calmodulin dependent protein kinase page
Create CaM-binding motifs
also http://en.wikipedia.org/wiki/Calmodulin
see Proteopedia:Policy For PYR-ABI1 page:

PP2C structures

1a6q – hPP2C
2iq1 – hPP2C κ
2p8e – hPP2C β
2cm1 – PP2C + Mn – Micobacterium tuberculosis
3d8k – PP2C – Toxoplasma gondii
3jrq, 3kdj, 3nmn – AtPP2C + Pyl1 – Arabidopsis thaliana
3nmt, 3kb3, 3nmv, 3ujl – AtPP2C + Pyl2
4ds8 – AtPP2C + Pyl3 + Mn
3rt0 – AtPP2C (mutant) + Pyl10
3qn1, 3zvu – AtPP2C + Pyr1
3ujg – AtPP2C + SNRK2
3ujk – AtPP2C

Pyr/PYL/RCAR structures

APO structures

3k3k, AtPyr1 dimer, one monomer is bound to ABA and the other unliganded
3kay, apo AtPYL1
3kdh, 3kaz, 3kl1 apo AtPYL2
3klx, apo ATPYL3
4jdl, Apo PYL5
3rt2, 3uqh apo PYL10


Structures with (+)-ABA
3k90, PYR1.ABA
3k3k, AtPyr1 dimer, one monomer is bound to ABA and the other unliganded
3jrs, AtPYL1.ABA
3kdi, 3kb0 AtPYL2.ABA
4dsb, 4dsc AtPYL3 with ABA
3oqu, PYL9.ABA
3r6p, PYL10.ABA


Structures with (-)-ABA
4jda, PYL3 with (-)-ABA


Structures with pyrabactin
3njo, PYR1.Pyrabactin
3nef, 3neg, 3nr4 PYL1.pyrabactin
3nj0, 3ns2 PYL2.Pyrabactin
3nj1, PYL2 V114I mutant.Pyrabactin
3nmh, AtPYL2 in complex with pyrabactin
3nmp, AtPYL2 mutant A93F in complex with pyrabactin
3oji, PYL3 with pyrabactin(?)


Structures with (+)-ABA or homolog and a PP2C
3qn1, PYR1.ABA - HAB1
3zvu, PYR1 H60P mutant .ABA - HAB1
3kb3, AtPYL1.ABA in complex with HAB1
3jrq, 3kdj AtPYL1.ABA in complex with ABI1
3ujl, PYL2.ABA - ABI2
4lga, 4lgb PYL2.ABA mimic- HAB1
4ds8, AtPYL3.ABA complex with HAB1 3rt0, PYL10.ABA - HAB1


Structures with pyrabactin and a PP2C
4la7, 4lg5 PYL2.Quinabactin - HAB1
3nmn, AtPYL1.pyrabactin in complex with ABI1
3nmt, AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase HAB1
3nmv, AtPYL2 mutant A93F.pyrabactin in complex with type 2C protein phosphatase ABI1


add link to kinase domain page on

PKA pages
Goodsells PKA article on PDB website


Editing issues

HTML tags don't work inside scene tags: superscript works fine here: Ca2+-bound CAD
but not here:

3hx4 - active TgCDPK1

Drag the structure with the mouse to rotate

In the green tag, the tag Ca<sup>2+</sup> and the text before it are not rendered.

headings that are in scrollable sections are not included in the the page index

Can load scene using a different structure into a frame, but can't change the caption of the frame.

ABA signaling

Clearest picture of Pyr1 gate - latch is in Annu Reviews article unused:

Proteopedia Page Contributors and Editors (what is this?)

Alice Harmon, Jaime Prilusky

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