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You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
Overall structure
The E. coli RlmJ structure consists of a (HS, residues 47-98, colour: orange) inserted within the main (MTase, residues 1-46 and 99-280, colour: blue).
Structural rearrangement upon cofactor and substrate binding
Proposed catalytic mechanism