We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.
1ek8
From Proteopedia
Revision as of 11:17, 24 September 2014 by OCA (Talk | contribs)
1ek8 is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
We have determined the crystal structure of the Escherichia coli ribosome recycling factor (RRF), which catalyzes the disassembly of the termination complex in protein synthesis. The L-shaped molecule consists of two domains: a triple-stranded antiparallel coiled-coil and an alpha/beta domain. The coil domain has a cylindrical shape and negatively charged surface, which are reminiscent of the anticodon arm of tRNA and domain IV of elongation factor EF-G. We suggest that RRF binds to the ribosomal A-site through its coil domain, which is a tRNA mimic. The relative position of the two domains is changed about an axis along the hydrophobic cleft in the hinge where the alkyl chain of a detergent molecule is bound. The tRNA mimicry and the domain movement observed in RRF provide a structural basis for understanding the role of RRF in protein synthesis.
Crystal structure of the ribosome recycling factor from Escherichia coli.,Kim KK, Min K, Suh SW EMBO J. 2000 May 15;19(10):2362-70. PMID:10811627[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
↑ Kim KK, Min K, Suh SW. Crystal structure of the ribosome recycling factor from Escherichia coli. EMBO J. 2000 May 15;19(10):2362-70. PMID:10811627 doi:10.1093/emboj/19.10.2362
