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1pek
From Proteopedia
Revision as of 23:54, 28 September 2014 by OCA (Talk | contribs)
1pek is a 3 chain structure with sequence from Engyodontium album. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The crystal structure of a transition state/product complex formed by the interaction between proteinase K and the substrate analogue N-Ac-L-Pro-L-Ala-L-Pro-L-Phe-D-Ala-L-Ala-NH2 has been determined at a resolution of 2.2 A and refined to an R-factor of 0.165 for 12,725 reflections. The inhibitor forms a stable complex through a series of hydrogen bonds with protein atoms and water molecules. The inhibitor is hydrolyzed between Phe 4I and D-Ala5I (I indicates inhibitor). The two fragments are separated by a distance of 3.07 A between the carbonyl carbon and the main chain nitrogen. Both fragments remain bound to the protein. The N-terminal fragment occupies subsites S5 to S1, whereas the C-terminal part is bound in S1' and S2', the first time that electron density for a substrate analogue has been observed in the P1' and P2' sites of a subtilisin-like enzyme. The flexible segments of the substrate recognition sites Gly100-Tyr104 and Ser132-Gly136 move appreciably to accommodate the inhibitor. Biochemical results indicate an inhibition by this specifically designed peptide of 95%.
Structure of the complex of proteinase K with a substrate analogue hexapeptide inhibitor at 2.2-A resolution.,Betzel C, Singh TP, Visanji M, Peters K, Fittkau S, Saenger W, Wilson KS J Biol Chem. 1993 Jul 25;268(21):15854-8. PMID:8340410[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
↑ Betzel C, Singh TP, Visanji M, Peters K, Fittkau S, Saenger W, Wilson KS. Structure of the complex of proteinase K with a substrate analogue hexapeptide inhibitor at 2.2-A resolution. J Biol Chem. 1993 Jul 25;268(21):15854-8. PMID:8340410
