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2lpy
From Proteopedia
Revision as of 03:27, 29 September 2014 by OCA (Talk | contribs)
2lpy is a 1 chain structure with sequence from Mason-pfizer monkey virus. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
We determined the solution structure of myristoylated Mason-Pfizer monkey virus matrix protein by NMR spectroscopy. The myristoyl group is buried inside the protein and causes a slight reorientation of the helices. This reorientation leads to the creation of a binding site for phosphatidylinositols. The interaction between the matrix protein and phosphatidylinositols carrying C(8) fatty acid chains was monitored by observation of concentration-dependent chemical shift changes of the affected amino acid residues, a saturation transfer difference experiment and changes in (31)P chemical shifts. No differences in the binding mode or affinity were observed with differently phosphorylated phosphatidylinositols. The structure of the matrix protein-phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P(2)] complex was then calculated with HADDOCK software based on the intermolecular nuclear Overhauser enhancement contacts between the ligand and the matrix protein obtained from a (13)C-filtered/(13)C-edited nuclear Overhauser enhancement spectroscopy experiment. PI(4,5)P(2) binding was not strong enough for triggering of the myristoyl-switch. The structural changes of the myristoylated matrix protein were also found to result in a drop in the oligomerization capacity of the protein.
The Structure of Myristoylated Mason-Pfizer Monkey Virus Matrix Protein and the Role of Phosphatidylinositol-(4,5)-Bisphosphate in Its Membrane Binding.,Prchal J, Srb P, Hunter E, Ruml T, Hrabal R J Mol Biol. 2012 Aug 2. PMID:22863803[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
↑ Prchal J, Srb P, Hunter E, Ruml T, Hrabal R. The Structure of Myristoylated Mason-Pfizer Monkey Virus Matrix Protein and the Role of Phosphatidylinositol-(4,5)-Bisphosphate in Its Membrane Binding. J Mol Biol. 2012 Aug 2. PMID:22863803 doi:10.1016/j.jmb.2012.07.021