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1xqq
From Proteopedia
Revision as of 19:26, 29 September 2014 by OCA (Talk | contribs)
1xqq is a 1 chain structure with sequence from Homo sapiens. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
We present a protocol for the experimental determination of ensembles of protein conformations that represent simultaneously the native structure and its associated dynamics. The procedure combines the strengths of nuclear magnetic resonance spectroscopy--for obtaining experimental information at the atomic level about the structural and dynamical features of proteins--with the ability of molecular dynamics simulations to explore a wide range of protein conformations. We illustrate the method for human ubiquitin in solution and find that there is considerable conformational heterogeneity throughout the protein structure. The interior atoms of the protein are tightly packed in each individual conformation that contributes to the ensemble but their overall behaviour can be described as having a significant degree of liquid-like character. The protocol is completely general and should lead to significant advances in our ability to understand and utilize the structures of native proteins.
Simultaneous determination of protein structure and dynamics.,Lindorff-Larsen K, Best RB, Depristo MA, Dobson CM, Vendruscolo M Nature. 2005 Jan 13;433(7022):128-32. PMID:15650731[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
↑ Lindorff-Larsen K, Best RB, Depristo MA, Dobson CM, Vendruscolo M. Simultaneous determination of protein structure and dynamics. Nature. 2005 Jan 13;433(7022):128-32. PMID:15650731 doi:10.1038/nature03199
