User:Shai Biran/Practice Proteopedia tutorial shai2

From Proteopedia

proteopedia linkproteopedia link

From the GFP example page -

1. Select the two paragraphs of text, and copy them (ctrl-v). Start from “Green Fluorescent Protein... ” and include the heading “Exploring the Structure” as well as both paragraphs.
2. Go back to the browser window with your assigned Sandbox page (the one you cleared earlier), and click “edit this page”.
3. Insert a blank line just after the automatic text on that page that ends with ‘…to the rescue’
4. After the blank line, paste the text that you copied in step (3). Save using the “Save page” button.

Tour page should look like

Your Heading Here (maybe something like 'Structure')

spinqualitylabelsall models Caption for this structure Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image This is a default text for your page Sandbox. Click above on edit this page to modify. Be careful with the < and > signs. You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue. Contents 1 Function 2 Disease 3 Relevance 4 Structural highlights Function Disease Relevance Structural highlights This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

References

1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644