Talk:Kisker lab: 5B5Q

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Scripts used

Panel C:

load 1EUV
select :A
color skyblue
select :B
color orange
select 511-513
color yellow
cartoon 0.3

Panel D:

load 1XT9
cartoon only
select :A
color white
select :B
color mediumorchid
select 92-102
color yellow
cartoon 0.3
set zshade on
set zshadepower 2

Panel E:

select all; cartoon only; color silver
select :B/2; hide selected
select :a/2; color lime
select 249-273: color yellow
select (275,345,292) and (sidechain or *.CA) and not _H; wireframe 100%
select selected and not _C; color CPK
select :B/1; color orchid
wireframe only
wireframe 100%
select :B and not _C
color CPK
select (102:A/1, 163:A/1, 119:A/1) and (sidechain or *.CA) and not _H
wireframe 100%
select selected and not _C
color CPK
select _H
hide selected

Bonus:

select all
cartoon only
color silver
select 275,292,345 and sidechain
wireframe 0.3
select 345 and sidechain
color yellow
center selected
select protein and within(10.0, 271) and not 249-273
isosurface ignore(solvent or 249-273) molecular MAP property color
select 254-270
trace only
color skyblue
select 271 and (sidechain or *.CA) and _C
wireframe 0.5