Talk:Schubert lab: bacterial InIC disrupts human Tuba complexes

From Proteopedia

Scripts used

1A NWASP mena
load 4CC2
select all; cartoon only; cartoon off
select :A; color green; spacefill only
select :B; trace only; color maroon
select :B and pro and (sidechain or *.N or *.CA); wireframe 0.4

load 4CC3
select :A; color green; spacefill only
select :B and pro and (sidechain or *.N or *.CA); wireframe 0.4

1B NWASP: 4CC2
select all; cartoon only; cartoon off
select :A; cartoon; color green
select :B; cartoon; color maroon; cartoon only
SELECT 1530:A AND (SIDECHAIN OR *.CA); WIREFRAME 50 
SELECT 1530:A AND SIDECHAIN; COLOR GRAY 
SELECT (1554, 1570, 1522, 1524, 1567) AND :A and (sidechain or *.CA); WIREFRAME 50; 
select selected and not *.CA; COLOR BLUE
SELECT 1567:A and (sidechain or *.N or *.CA); WIREFRAME 50
select selected and not *.CA; COLOR BLUE
SELECT PRO:B and (sidechain or *.N or *.CA); WIREFRAME 50
SELECT :B and (sidechain or *.CA) and not pro; WIREFRAME 50
select 1550:A.CA; label “n-Src" 
select 1562:A.CA; label "4"
color label black

2 InIC
load 4CC4
select all; cartoon only; cartoon off
select :A; cartoon; color skyblue
select :B; cartoon; color green
select (77-214) and :A; color purple
select (:A,:B) and protein
isosurface ignore (not selected) SASURFACE 1.2  MAP property color translucent 0.8

3A InIC
load 4CC4
select all; cartoon only; cartoon off
select (207-213, 185-191,163-169,142-148, 120-127) and :A; cartoon only; color slateblue
select (1519-1523, 1568-1573) and :B; trace only; color limegreen
select (1572, 1570, 1522, 1569) and :B and (sidechain or *.CA); wireframe 0.4
select 1572:B%A; wireframe off
select not _C and (1572, 1570, 1522, 1569 and sidechain); color cpk
set zshade on
set zshadepower 4

6A InIC NWASP
load 4CC4
select all; cartoon only; color cyan
select :B; color green
select (77-214) and :A; color blue

6B NWASP
load 4CC2
select all; cartoon only; cartoon off
select :A and protein; spacefill; color green
select (1572, 1552, 1521, 1573) and :A; color blue
select (1524, 1527, 1528, 1530, 1531, 1547-1549, 1554, 1565, 1567) and :A; color pink
select (1522, 1551, 1553, 1569, 1570) and :A; color silver
select :B; trace; color maroon
select :B and pro and (sidechain or *.N or *.CA); wireframe 0.3
select :B and not pro and (sidechain or *.CA); wireframe 0.3
select :A and protein; isosurface ignore (not selected) SASURFACE 1.2  MAP property