Function
[1] is a serine protease that is found in the bacteria Vibrio cholerae. The function of VesB is to contribute to intestinal growth and pathogenesis. VesB is also able to cleave peptide bonds in proteins after arginines. This means that the substrate of VesB would be a protein containing arginine, or multiple arginines (XXRXX) and the product after cleavage is all of the protein through the arginine, and the rest of the protein(XXR + XX), or the rest of the protein through the next arginine, if there are multiple.
Disease
VesB has been detected in vibrio cholerae from patients with clinical cholera. VesB is able to cleave the A subunit of cholera toxin, which is a process that leads to the activation of cholera toxin. Cholera toxin is then released into the intestine, causing Cholera. When the toxin is released, it causes rapid fluid loss and severe dehydration.
Relevance
Structural highlights
VesB's is made up mostly of beta sheets with some alpha helices and random coil. VesB has that make up it's tertiary/quaternary structure. It has a N-terminal protease domain with a trypsin/chymotrypsin-fold and a C-terminal Ig-fold domain. Although VesB's structure does not seem very large, looking at a of VesB shows a more accurate view of how large VesB is and how much space it actually takes up.
VesB has few regions on it's structure, including the active site. These hydrophobic regions are important because they show where the active site is located, and the hydrophilic regions show where the alpha helices are located, since they are hydrophilic on the outside, and have a hydrophobic core.The hydrophilic regions also show where water would most likely be attracted to, and because there are so many hydrophilic regions, it would show that a great amount of water would be attracted to VesB.
This crystal structure was solved without a ligand, but the VesB ligand is known to be any protein containing Arg-X.
The of VesB is made up of Asp125-His78-Ser221. In this triad, aspartic acid is deprotonated and proton transfer goes from histidine to aspartic acid. Since histidine is then deprotonated, it grabs the proton from serine's hydroxyl group. This active serine then can attack an incoming substrate, which allows VesB to cleave the substrate.
The active site of VesB is made of the catalytic triad (Asp125,His78,Ser221), a hydrophobic pocket (Val159, Val180, Ile164), and a cleavage site (Arg32, Ile33). Asp220 is also in the active site and coordinates the N-terminal group of Ile33 in active VesB.
References
- ↑ Gadwal S, Korotkov KV, Delarosa JR, Hol WG, Sandkvist M. Functional and structural characterization of Vibrio cholerae extracellular serine protease B, VesB. J Biol Chem. 2014 Jan 23. PMID:24459146 doi:http://dx.doi.org/10.1074/jbc.M113.525261
