PROTAC

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PROTAC (proteolysis-targeting chimera) is a small protein with two active domains joined by a linker.

Representative PROTAC from PROTACpedia targeting EGFR Epidermal growth factor receptor P00533. target binding ligandlinkerE3 binder
Representative PROTAC from PROTACpedia targeting EGFR Epidermal growth factor receptor P00533. target binding ligandlinkerE3 binder

Predicting PROTACs

PRosettaC [1] is a computational protocol for the prediction of PROTAC-induced ternary complexes [2]. The protocol receives as input, two protein structures (protein target and E3 ligase), including their appropriate ligands (binders), as well as the PROTAC chemical structure in a SMILES representation, and outputs predicted models for the ternary complex.

References

  1. ↑ PRosettaC https://prosettac.weizmann.ac.il
  2. ↑ Zaidman D, Prilusky J, London N. PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes. J Chem Inf Model. 2020 Sep 25. doi: 10.1021/acs.jcim.0c00589. PMID:32976709 doi:http://dx.doi.org/10.1021/acs.jcim.0c00589

Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky

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