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You may include any references to papers as in: the use of JSmol in Proteopedia [1] or to the article describing Jmol [2] to the rescue.
1. Introduction
2. Structure Overview
2.1 Domains
2.2 Binding Pockets
2.3 Active site
3. Relationship to other proteins
4. Clinical Relevance
5. References
This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.