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From Proteopedia
Brain-Derived Neurotrophic Factor
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BackgroundBrain-derived neurotrophic factor, or BDNF for short, is a protein in humans that is expressed primarily in areas of the brain such as the hippocampus, basal forebrain, hypothalamus, brainstem, and spinal cord (Bathina & Das, 2015). It is also expressed in the lungs, heart, spleen, gastrointestinal tract, liver, fibroblasts, and vascular tissue (Bathina & Das, 2015). The protein is encoded by the BDNF gene located on human chromosome 11 (Binder & Scharfman, 2004). It belongs to the family of neurotrophins, which in general, are proteins that are important in neuronal survival, development, function, and brain plasticity. It was first expected to only be responsible for neurogenesis—the growth and development of new neurons within the central nervous system (Martinowich, 2007). However, it’s now widely believed that the main function is to regulate synaptic plasticity (Martinowich, 2007). Synaptic plasticity is induced during memory formation and is necessary for information storage, so BDNF is important in learning, memory, and higher thinking (Martin, Grimwood, & Morris, 2000). BDNF is synthesized in the endoplasmic reticulum (Bathina & Das, 2015). It then moves through the Golgi and trans-Golgi network and is cleaved by a protein convertase enzyme to form the biologically active form of the protein that gets sent into secretory vesicles (Bathina & Das, 2015). Vesicles bind to carboxypeptidase E, an enzyme responsible for the biosynthesis of the protein. Mice have been studied to examine when a disruption in this binding occurs. When there is a disruption in this binding, the ability for cells to sort BDNF greatly decreases. Mice that are born with this problem have significant neuron loss that results in problems affecting balance and coordination, breathing, hearing, and even death, suggesting the protein's role in normal neuronal development (Demetre, 2009). Many studies have linked BDNF with multiple neurological diseases. Some of these include depression, Alzheimer’s disease, Huntington’s disease, and multiple sclerosis. In neurodegenerative diseases, BDNF levels are decreased. In addition to its neurological effects, BDNF plays a large role in homeostasis, specifically energy intake and body weight. Studies have also shown that physical activity can increase levels of brain BDNF. The positive benefits that exercise has on brain health and function are primarily due to optimizing BDNF levels, particularly in the hippocampus (Phillips, 2017). Rodents exposed to physical activity five days a week for four weeks demonstrate an increase in BDNF synthesis and release (Phillips, 2017). In addition, exercise that includes endurance training induces the expression of muscle-derived proteins that upregulate BDNF expression. StructureBrain-derived neurotrophic factor is a relatively small protein, only 27.48 kDa, made of 119 amino acid residues (Protein Data Bank). The secondary structure of the protein is primarily beta-sheets with only a small number of alpha-helices (Protein Data Bank). The protein is a non-covalently linked heterodimer and has close structural homology to nerve growth factor (NGF) proteins (Binder & Scharfman, 2004). BDNF contains a cysteine knot motif, indicating its importance in neurogenesis. There are a few single-nucleotide polymorphisms (SNPs) of BDNF. The most commonly studied one is Val66Met and is exclusive to humans. This point mutation occurs at position 196 (or amino acid residue 66) and mutates a guanine to adenine. Upon transcription, this mutation causes an amino acid switch of valine to methionine. This polymorphism plays a role in destabilizing the mRNA transcript, leading to premature degradation (Baj et al., 2013). The protein that is able to be translated is not trafficked or secreted sufficiently. It can potentially alter protein-protein interactions, binding affinities, localisation, or conformational stability of the protein (Nociti, 2020). Those with this deficit show a decline in short-term episodic memory along with abnormal activity in the hippocampus (Martinowich, 2007). This mutation is also associated with major depressive disorder (Martinowich, 2007). FunctionsNeurogenesis
Synaptic Plasticity
Role in DiseasesDepression Glucocorticoid levels are elevated during stress. Prolonged exposure to stressors and continual glucocorticoid levels reduce BDNF levels and the rate of neurogenesis. Proliferation and survival of new neurons in the hippocampus is essential for those who suffer from major depressive disorder. In addition, the levels of BDNF have been shown to be reduced in the hippocampus in anxiety and depressive disorders (Martinowich, 2007). These two processes co-occur and can lead to depression. Fortunately, antidepressant-like effects have been seen from direct infusion of BDNF into the hippocampus. Rodents with over-expression of BDNF have shown increased resilience to depression-related symptoms. Additional studies have shown that long-term administration of antidepressants, such as fluoxetine and sertraline, increase mRNA in the hippocampus, thus increasing BDNF levels and neurogenesis. <i>Alzheimer’s Disease Decreased mRNA and protein levels of BDNF have been examined in AD patients. Some evidence has shown that amyloid-β protein plays a direct role in inhibiting the formation of BDNF, reducing its levels in the brain (Tanila, 2017). In an Alzheimer’s Disease brain, abnormal amyloid-β protein levels occur and clump together to form plaques. The direct connections between BDNF and Alzheimer’s Disease are still unclear, however, the formation of plaques may greatly decrease the formation of BDNF. <i>Multiple Sclerosis Multiple sclerosis is an autoimmune, neurodegenerative disease of the central nervous system. The pathophysiology of this disease is due to the altered interactions between immune cells and cells of the central nervous system, leading to an uncontrolled inflammatory response that damages nerve cells. A possible mechanism of the neurodegeneration may be due to the release of BDNF by immune cells, as well as glial cells and astrocytes, two cell types of the central nervous system (Nociti, 2020). Specifically, CD4+ and CD8+ T lymphocytes, B lymphocytes, and monocytes can produce BDNF (Nociti, 2020). These immune cells in actively demyelinating areas of MS lesions overexpress BDNF (Nociti, 2020). Neurotrophin receptors that are expressed in immune cells can be targeted by paracrine neurotrophin actions, so neurotrophins, like BDNF, can mediate crosstalk between the nervous and immune systems. As of 2020, a better understanding of the interaction between BDNF and neuroinflammation is needed in order to improve the knowledge of pathogenesis and in developing therapeutics for CNS diseases (Nociti, 2020). Clinical SignificanceBrain-derived neurotrophic factor appears to contribute to many systems and processes within the human body. Its role in neurodegenerative and neuropsychiatric disorders appears to be very promising, as additional research needs to be done. A decrease in protein expression is seen in many neurological disorders such as Alzheimer’s Disease, as detailed above, as well as Parkinson’s Disease and Huntington’s Disease. Physical exercise, especially endurance training, increases BDNF levels, improving symptoms related to depression. BDNF appears to potentially prevent Type 2 Diabetes due to its role in energy intake and body weight. However, therapeutic approaches regarding BDNF and Type 2 Diabetes prevention and management remain uncertain. Further studies that examine other neurotrophins on their metabolic effects, synaptic plasticity, and neural survival are crucial to understand the pathogenesis of BDNF in depth. This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644