1. The PDB file generated by PACUPP was uploaded to Proteopedia: Image:2j1n cavities fine small 3 5 20 24.pdb.
2. After modifying the default PACUPP rendering (using PACUPP Peel and Extend commands), I saved a state script (write 2j1n.spt).
3. Using a plain text editor, I commented out the load command near the top of the state script.
4. I loaded the uploaded PACUPP PDB file into this page using the SAT.
5. While in the SAT, I dropped 2j1n.spt into JSmol.
6. I saved the scene getting .
7. I loaded the previous scene in the SAT and manually issued the Jmol commands select protein; cartoon off; producing .
