Superoxide dismutase 3D structures

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3D Structures of SOD

Updated on 10-December-2023 {{#tree:id=OrganizedByTopic|openlevels=0|

• Metal-free apo superoxide dismutase

• • 3ecu, 3k91, 5j0c, 5j0f, 5j0g, 6flh, 6ffk – hSOD - human
    
  • 1ozt, 3gzp, 3gzq, 3ecv, 3ecw, 2gbu, 4mcn - hSOD (mutant)
    
  • 1rk7 - hSOD (mutant) – NMR
    
  • 3hog – SOD – tomato
    
  • 1p7g – SOD – Pyrobaculum aerophilum
    
  • 3kbe – CeSOD – Caenorhabditis elegans
    
  • 1t6i, 1t6q – ScSOD - Streptomyces coelicolor
    
  • 3ak1 - ApSOD - Aeropyrum pernix
    
  • 5cu9 - CaSOD - Candida albicans
    

• Cu-Zn-superoxide dismutase

• • 2jlp, 2v0a, 2c9v, 2c9u, 2c9s, 1pu0, 1hl5, 1sos, 1spd, 3kh3, 3kh4, 3re0, 3t5w, 4b3e, 4ff9, 2mp3- hSOD +Zn+Cu
    
  • 2wko, 3gzo, 2zkw, 2zkx, 2zky, 3cqp, 3cqq, 2vr6, 2vr7, 2vr8, 2gbt, 2gbv, 1uxl, 1uxm, 1ptz, 1ozu, 1n18, 1n19, 1fun, 1mfm, 1azv, 2wyt, 2xjk, 4mcm, 4oh2, 4xcr, 5k02, 6foi, 6dtk, 7fb6, 7t8e – hSOD (mutant) +Zn+Cu
    
  • 1l3n, 1dsw, 1ba9, 2lu5 – hSOD (mutant) +Zn+Cu - NMR
    
  • 7vzf – hSOD + Zn+Cu fiber – Cryo EM
    
  • 8gsq – hSOD + drug + Zn+Cu
    
  • 2wyz - hSOD (mutant) +Zn+Cu+UMP
    
  • 2wz0 - hSOD (mutant) +Zn+Cu+aniline
    
  • 2wz5 - hSOD (mutant) +Zn+Cu+methionine
    
  • 2wz6 - hSOD (mutant) +Zn+Cu+quinazoline
    
  • 4a7g, 4a7q - hSOD (mutant) +Zn+Cu + quinazoline derivative
    
  • 4a7s - hSOD (mutant) +Zn+Cu + uridine derivative
    
  • 4a7t - hSOD (mutant) +Zn+Cu + isoproterenol
    
  • 4a7u - hSOD (mutant) +Zn+Cu + adrenaline
    
  • 4a7v - hSOD (mutant) +Zn+Cu + dopamine
    
  • 6fon - hSOD +Zn+Cu + copper chaperone for SOD
    
  • 6fp6, 6fol - hSOD (mutant) +Zn+Cu + copper chaperone for SOD
    
  • 7nxx – hSOD+Zn+Cu + nanobody
    
  • 2z7u, 2z7w, 2z7y, 2z7z, 2aeo, 1q0e, 1e9p, 1e9q, 1cb4, 1cbj, 1sxn, 1sxa, 1sxb, 1sxc, 1spd, 1sda, 3sod, 2sod, 2zow, 3hw7, 8iq0, 8iq1 – cSOD+Zn+Cu - bovine
    
  • 1sxs - bSOD +Zn+Cu+SCN
    
  • 1sxz - bSOD +Zn+Cu+N3
    
  • 7wwt – dSOD +Zn+Cu - dog
    
  • 7wwy, 7wx0, 7wx1 – dSOD (mutant) +Zn+Cu
    
  • 3l9y - smSOD +Zn+Cu - Silkworm
    
  • 3mnd – SOD + Zn + Cu – Pig tapeworm
    
  • 4oja - SOD +Zn+Cu – hydra
    
  • 3pu7, 3s0p - tSOD + Zn + Cu - tomato
    
  • 1srd – SOD+Zn+Cu – Spinach
    
  • 1f18, 1f1a, 1f1d, 1b4t – ySOD (mutant) +Zn+Cu – yeast
    
  • 1f1g, 1b4l, 2jcw, 1sdy - ySOD +Zn+Cu
    
  • 1yaz - ySOD +Zn+Cu+N3
    
  • 1jk9 – ySOD+Zn+Cu chaperone for SOD
    
  • 2wwo – YpSOD+Zn+Cu – Yersinia pseudotuberculosis
    
  • 2wwn - YpSOD+Zn+Cu+N3
    
  • 3f7k - ApSOD +Zn+Cu+H2O2 – Alvinella pompejana
    
  • 3f7l - ApSOD +Zn+Cu
    
  • 6vbs, 6vbt – SeSOD +Zn+Cu – Salmonella enterica – NMR
    
  • 2k4w – SeSOD (mutant) +Zn+Cu – NMR
    
  • 1eqw, 6d52 - SOD +Zn+Cu – Salmonella typhimurium
    
  • 3ce1 - SOD +Zn+Cu – Cryptococcus liquefaciens
    
  • 4l05 - SOD +Zn+Cu – Brucella abortus
    
  • 2aps - SOD +Zn+Cu – Actinobacillus pleuropneumoniae
    
  • 2aqn - NmSOD +Zn+Cu – Neisseria meningitides
    
  • 2aqp, 2aqq, 2aqr, 2aqs, 2aqt – NmSOD (mutant) +Zn+Cu
    
  • 1z9n - HdSOD +Zn+Cu+haem – Haemophilus ducreyi
    
  • 1z9p - HdSOD +Zn+Cu
    
  • 1to4, 1to5 - SOD +Zn+Cu – Schistosoma mansoni
    
  • 1oaj, 1bzo, 1yai - PlSOD +Zn+Cu – Photobacterium leiognathi
    
  • 1oal, 1ib5, 1ibb, 1ibd, 1ibf, 1ibh – PlSOD (mutant) +Zn+Cu
    
  • 1eso - EcSOD +Zn+Cu - Escherichia coli
    
  • 1yso - EcSOD +Zn+Cu
    
  • 3kbf – CeSOD+Zn+Cu
    
  • 4u4i - SOD +Zn+Cu – megavirus chiliensis
    
  • 5in2 - SOD +Zn+Cu – Onchocerca volvulus
    
  • 7b4p - BbSOD + Cu + Zn – Bacteroidetes bacterium
    
  • 6zs1 – CtSOD + Zn + Cu – Chaetomium thermophilum
    
  • 7ypp – RvSOD +Zn+Cu – Ramazzottius varieornatus
    
  • 7ypr – RvSOD (mutant) +Zn+Cu
    

• Mn-superoxide dismutase

• • 2qka, 2adp, 2adq, 1xdc, 1xil, 1n0j, 1luv, 1msd, 5vf9, 5j07, 5gxo, 5t30, 7kku, 7klb – hSOD+Mn
    
  • 7kks, 7kkw – hSOD+Mn – Neutron diffraction
    
  • 2qkc, 3c3s, 3c3t, 2p4k, 1zsp, 1zte, 1zuq, 2gds, 1szx, 1pl4, 1pm9, 1n0n, 1luw, 1ja8, 1em1, 1ap5, 1ap6, 1qnm, 1var – hSOD (mutant)+Mn
    
  • 1xso – SOD+Mn – Xenopus laevis
    
  • 3bfr, 1jcv, 3lsu, 3rn4 – ySOD+Mn
    
  • 4e4e, 4f6e - ySOD (mutant)+Mn
    
  • 2rcv – SOD+Mn – Bacillus subtilis
    
  • 1xre, 1xuq – SOD+Mn – Bacillus anthracis
    
  • 2aw9, 2cdy, 2ce4, 3kky – DrSOD+Mn – Deinococcus radiodurans
    
  • 2a03 – SOD+Mn+Zn – Plasmodium berghei
    
  • 1jr9 - SOD +Zn+Mn – Virgibacillus halodenitrificans
    
  • 1gv3 – SOD+Mn – Anabaena
    
  • 1kkc – SOD+Mn – Aspergillus fumigatus
    
  • 1mng, 3mds – TtSOD+Mn – Thermus thermophilus
    
  • 3evk – SOD+Mn – Pyrobaculum aerophilum
    
  • 1ar4, 1ar5 – PfSOD+Mn - Propionibacterium freudenreichii
    
  • 3ak2 - ApSOD+Mn
    
  • 4br6 - SOD+Mn – Chaetomium thermophilum
    
  • 4gun - CaSOD (mutant) +Mn
    
  • 3qvn - CaSOD +Mn
    
  • 4jzg - CdSOD + Mn – Clostridium difficile
    
  • 4c7u - SOD +Mn – Arabidopsis thaliana
    
  • 5a9g - SOD +Mn – Sphingobacterium
    
  • [[5x2j], 7ddw, 7w6w, 7wnk, 7wnl - SOD (mutant) +Mn - Staphylococcus equorum
    
  • 5n57, 5n56 - SaSOD +Mn - Staphylococcus aureus
    
  • 6ex5, 6qv8, 6qv9 - SaSOD (mutant) +Mn
    
  • 1d5n, 1vew, 3ot7 - EcSOD+Mn
    
  • 1zlz, 1ixb, 1ix9, 1en4, 1en5, 1en6, 1i08, 1i0h – EcSOD (mutant)+Mn
    
  • 3k9s – EcSOD+ Mn + H2O2
    
  • 3dc5, 3dc6, 5ag2, 4x9q – CeSOD-3 +Mn – Caenorhabditis elegans
    
  • 6elk, 6s0d, 6qzn, 6qzm – CeSOD-3 (mutant)+Mn
    
  • 6gsc, 6gsb – SOD (mutant) +Mn – Sphingobacterium spiritivorum
    
  • 6elk – CeSOD (mutant)+Mn
    
  • 6dqy, 7svs - TrSOD +Mn - Trichoderma reesei
    
  • 6cyx, 6cys, 6cyp, 6cyl, 5tir – TrSOD (mutant)+Mn
    
  • 6bej - SOD + Mn - Xanthomonas cetri
    
  • 6pro - SOD + Mn - Geobacillus stearothermophilus
    

• Fe-superoxide dismutase

• • 3js4 – SOD+Fe – Anaplasma phagocytuphilum
    
  • 1mmm, 1isa, 1isb, 1isc – EcSOD+Fe
    
  • 2bkb, 2nyb, 1za5 – EcSOD (mutant)+Fe
    
  • 1y67 – DrSOD+Fe
    
  • 3esf – SOD (mutant)+Fe – Trypanosoma brucei
    
  • 2gpc, 4dvh – SOD+Fe – Trypanosoma cruzi
    
  • 3h1s – SOD+Fe – Francisella tularensis
    
  • 2w7w – SOD+Fe – Aliivibrio salmonicida
    
  • 3cei – SOD+Fe – Helicobacter pylori
    
  • 2goj, 2bpi – PfSOD+Fe – Plasmodium falciparum
    
  • 2awp – SOD+ion – Plasmodium knowlesi
    
  • 2cw2, 2cw3 – SOD+Fe – Perkinsus marinus
    
  • 1wb7, 1wb8 – SOD (mutant)+Fe – Sulfolobus solfataricus
    
  • 1unf – SOD+Fe – Vigna unguiculata
    
  • 1uer, 1ues, 1qnn – SOD+Fe – Porphyromonas gingivalis
    
  • 1my6 – SOD+Fe – Thermosynechococcus elongates
    
  • 1ma1 – SOD+Fe – Methanothermobacter thermautotrophicus
    
  • 1ids – MtSOD+Fe - Mycobacterium tuberculosisbr />
  • 1gn2, 1gn3, 1gn4, 1gn6 – MtSOD (mutant)+Fe
    
  • 1dt0, 3sdp – SOD+Fe – Pseudomonas putida
    
  • 1b06 – SOD+Fe – Sulfolobus acidocaldarius
    
  • 1bs3 – PfSOD+Fe+F
    
  • 1bsm, 1bt8 – PfSOD+Fe
    
  • 1avm – PfSOD+Fe+N3
    
  • 1coj – SOD+Fe – Aquifex pyrophilus
    
  • 3lio, 3ljt, 3lj9, 3ljf, 4l2d – PhSOD+Fe - Pseudoalteromonas haloplanktis
    
  • 4l2a, 4l2b, 4l2c - PhSOD (mutant)+Fe
    
  • 3ak3 - ApSOD+Fe
    
  • 3tqj – SOD + Fe – Coxiella burneti
    
  • 4f2n - SOD + Fe – Leishmania major
    
  • 3tjt - CdSOD + Fe
    
  • 4jyy - CdSOD + Fe + N3
    
  • 4ffk – SOD + Fe – Acidilobus saccharovorans
    
  • 4yet – BbSOD+ Fe – Babesia bovis
    
  • 6jov – SOD+ Fe – synthetic
    
  • 6j55 – SOD+ Fe – Acanthamoeba castellanii
    
  • 6ex4, 6ex3 - SaSOD + Fe
    
  • 7azq, 7azr - SOD + Fe – Rhodobacter capsulatus
    
  • 7sbh - SOD + Fe + FMN – Acinetobacter
    
  • 8avl - BfSOD+Fe – Bacterioides fragilis
    
  • 8avm - BfSOD (mutant)+Fe
    
  • 8avk, 8avn – SOD+ Fe – Candidatus wolfebacteria
    
  • 8bhx – SOD+ Fe – Thermobifida fusca
    

• Fe-Mn-superoxide dismutase

• • 4yio, 4yip - SOD + Fe + Mn – Streptococcus thermophilus<br /

• Co-superoxide dismutase

• • 4jz2 - CdSOD + Co
    
  • 5kbk - CaSOD 5 + Co
    
  • 5kbl, 5kbm - CaSOD 5 (mutant) + Co
    

• Ni-superoxide dismutase

• • 3g4x, 3g4z, 3g50, 1t6u, 4ncq – ScSOD (mutant)+Ni
    
  • 1q0d, 1q0f, 1q0g, 1q0k, 1q0m – SOD+Ni – Streptomyces seoulensis
    

• Zn-superoxide dismutase

• • 1hl4, 5yul - hSOD +Zn
    
  • 3h2p, 3h2q, 3hff, 3gqf, 2nnx, 1p1v, 1oez, 2xjl, 3qqd, 4bd4, 4bcz, 4bcy, 6spa – hSOD (mutant) +Zn
    
  • 2af2, 1kmg - hSOD (mutant) +Zn – NMR
    
  • 5u9m – hSOD (mutant) + SOD Cu chaperone + Zn
    
  • 7t8f, 7t8g, 7t8h – hSOD (mutant) + drug + Zn
    
  • 6a9o – hSOD + inhibitor + Zn
    
  • 5ytu – hSOD + isopernaline + Zn
    
  • 5yto – hSOD + naphthalene derivative + Zn
    
  • 5o40, 6spi – hSOD + ebselen + Zn
    
  • 6spk, 6spj, 6sph – hSOD-1 (mutant) + ebselen + Zn
    
  • 6z4i, 6z4h, 6z4k, 6z4j, 6z4m, 6z4l, 6z4o, 6z4g, 6z3v – hSOD-1 (mutant) + benzoisoselenazolone derivative + Zn
    
  • 5o3y – hSOD + ebsulfur + Zn
    
  • 3gtt – mSOD+Zn – mouse
    
  • 3gtv, 3ltv – mSOD/hSOD+Zn
    
  • 3l9e - smSOD +Zn
    
  • 3mkg, 3km1, 3km2 – tSOD + Zn
    
  • 7bjk - AtSOD + Zn
    
  • 2q2l - SOD +Zn – Potentilla atrosanguinea
    
  • 4rvp – SOD + Zn – Sedum alfredii
    
  • 7b4o - BbSOD + Zn
    , 7re5, 7rh6, 7rh7

• Cu-superoxide dismutase

• • 2r27 - hSOD +Cu
    
  • 1cob – bSOD+Cu+Co
    
  • 1e9o – cSOD+Cu
    
  • 1pzs - MtSOD +Cu
    
  • 4n3t, 4n3u – CaSOD + Cu
    
  • 5kbk, 5kbl, 5kbm – CaSOD (mutant) + Cu
    
  • 8aca - DrSOD +Cu – Cryo EM
    
  • 6adq, 7re5, 7rh6, 7rh7 - SOD +Cu in respiratory complex – Mycobacterium smegmatis – Cryo EM
    

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