4m7f
From Proteopedia
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with bound ManNAc
Structural highlights
FunctionFBCD1_HUMAN Acetyl group-binding receptor which shows a high-affinity and calcium-dependent binding to acetylated structures such as chitin, some N-acetylated carbohydrates, and amino acids, but not to their non-acetylated counterparts. Can facilitate the endocytosis of acetylated components.[1] [2] Publication Abstract from PubMedThe high-resolution crystal structures of a recombinant fragment of the C-terminal fibrinogen-like recognition domain of FIBCD1, a vertebrate receptor that binds chitin, have been determined. The overall tetrameric structure shows similarity in structure and aggregation to the horseshoe crab innate immune protein tachylectin 5A. The high affinity ligand N-acetyl mannosamine binds in the S1 site, predominantly via the acetyl group with the oxygen and acetamide nitrogen hydrogen-bonded to the protein and the methyl group inserted into a hydrophobic pocket. The binding of the ManNAc pyranose ring differs markedly between the two independent subunits but in all structures the binding of the N-acetyl group is conserved. In the native structure, a crystal contact results in one of the independent protomers binding the first GlcNAc of the Asn340 N-linked glycan on the other independent protomer. In the ligand bound structure this GlcNAc is replaced by the higher affinity ligand ManNAc. In addition, a sulphate ion has been modelled into the electron density at a location similar to the S3 binding site in L-ficolin, while in the native structure an acetate ion has been placed in the S1 N-acetyl binding site and a sulphate ion has been placed adjacent to this site. These ion binding sites are ideally placed to receive the N-acetyl and sulphate groups of sulphated GalNAc residues of glycosaminoglycans such as chondroitin and dermatan sulphate. Together, these structures give insight into important determinants of ligand selectivity, demonstrating versatility in recognition and binding whilst maintaining conservation in N-acetyl and calcium binding. Crystal structure of the tetrameric fibrinogen-like recognition domain of Fibrinogen C domain containing 1 (FIBCD1).,Shrive AK, Moeller JB, Burns I, Paterson JM, Shaw AJ, Schlosser A, Sorensen GL, Greenhough TJ, Holmskov U J Biol Chem. 2013 Dec 19. PMID:24293368[3] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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