1det

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spinqualitylabelsall models 1det, resolution 1.8Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP

Overview

The carboxymethylation of RNase T1 at the gamma-carboxyl group of Glu58, leads to a complete loss of the enzymatic activity while it retains, substrate-binding ability. Accompanying the carboxymethylation, RNase T1, undergoes a remarkable thermal stabilization of 9 degrees C in the melting, temperature (Tm). In order to clarify the inactivation and stabilization, mechanisms of RNase T1 by carboxymethylation, the crystal structure of, carboxymethylated RNase T1 (CM-RNase T1) complexed with 2'-GMP was, determined at 1.8 A resolution. The structure, including 79 water, molecules and two Na+, was refined to an R factor of 0.194 with 10 354, reflections > 1 sigma (F). The carboxyl group of CM-Glu58, which locates, in the active site, occupies almost the same position as the phosphate, group of 2'-GMP in the crystal structure of intact RNase T1.2'-GMP, complex. Therefore, the phosphate group of 2'-GMP cannot locate in the, active site but protrudes toward the solvent. This forces 2'-GMP to adopt, an anti form, which contrasts with the syn form in the crystal of the, intact RNase T1.2'-GMP complex. The inaccessibility of the phosphate group, to the active site can account for the lack of the enzymatic activity in, CM-RNase T1. One of the carboxyl oxygen atoms of CM-Glu58 forms two, hydrogen bonds with the side-chains of Tyr38 and His40. These hydrogen, bonds are considered to mainly contribute to the higher thermal stability, of CM-RNase T1. Another carboxyl oxygen atoms of CM-Glu58 is situated, nearby His40 and Arg77. This may provide additional electrostatic, stabilization.

About this Structure

1DET is a Single protein structure of sequence from Aspergillus oryzae with NA and 2GP as ligands. Active as Ribonuclease T(1), with EC number 3.1.27.3 Full crystallographic information is available from OCA.

Reference

Crystal structure of ribonuclease T1 carboxymethylated at Glu58 in complex with 2'-GMP., Ishikawa K, Suzuki E, Tanokura M, Takahashi K, Biochemistry. 1996 Jun 25;35(25):8329-34. PMID:8679590

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